06-18-2017
Sorry Neo, does the below help?
The
NM_ value of
$2 in
file1, after splitting on the
., will match a substring
NM_ in
$12 (the majority of the time), or
$9 (in some cases).
The substring that matches is extracted starting from the
NM_ until the
; or break (if it is the last value, like in case 1 in the example).
The text in
$7 of
file2 determines the field to use/ extract from.... that is if
$7=exonic, then use
$12, but if
$7 is not =exonic, then use
$9.
The extracted value is used to update
$14 from a
. to the extracted value. Thank you very much
.
Last edited by cmccabe; 06-18-2017 at 08:39 AM..
Reason: added details
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