Hi
I am pretty new to bash scripting.I am trying to write the if statement in bash and it give me error. Can you please help me what I am doing wrong in If statement?
#! /bin/bash
head -5 $1
echo "remove $1 ?"
read answer
if
then
echo invalid answer
elif
rm $1
echo "$1 is deleted"
elif
then
echo file is not deleted
else
echo "invalid answer"
fi
What i really want this to do is to ask to delete the file or not..it says something wrong... (1 Reply)
#! /bin/bash
USAGE=" | ]
if
then
echo "$USAGE"
exit 1
fi
while getopts lb: OPTION
do
case $(OPTION)in
a) echo Hi there!
exit 2;;
b) echo hello
o) OARG=$OPTARG;;
\?)echo "$USAGE" ;;
exit 2;;
esac
done
shift `expr... (1 Reply)
cmd="find /a/technologies -name '*.jar' | grep \"Tuning/specificloader/lib\""
echo $cmd
for index in `$cmd`
do
SL_JARS="${SL_JARS}:${index}"
done
gives error ==>
find: paths must precede expression
Usage: find
but
for index in... (2 Replies)
can anyone tell me why this code doesn't work how its supposed to, its the hangman game but it doesn't play how its supposed to
#!/bin/bash
NoAttempts="0"
livesgiven="5"
LivesRemain=$livesgiven
LettersAttempted=""
wordfile=words
numwords=0
function menu()
{
clear
cat << menu... (1 Reply)
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
ls -ld htdocs
drwxr-x--- 3 root root 8192 2006-11-19 10:41 htdocs
How would a host administrator... (1 Reply)
hi whats wrong in below??
CHECK=M10;
if ;
then
echo "hello hi";
else
echo "how are u hello hi";
fi
I am getting error as
./test.sh: line 2: '
./test.sh: line 2: M10: command not found
./test.sh: line 2: M10: command not found
./test.sh: line 2: M10: command not found (8 Replies)
Hi
I am pretty new to bash scripting.I am trying to write the if statement in bash and it give me error. Can you please help me what I am doing wrong in If statement?
if && &&
then
fector=$kk;
divide=$DB_SIZE/$kk;
echo "factor value:$fector"
echo"divide value:$divide"... (1 Reply)
Hi
I am pretty new to bash scripting.I am trying to write the if statement in bash and it give me error. Can you please help me what I am doing wrong in If statement?
if && &&
then
fector=$kk;
divide=$DB_SIZE/$kk;
echo "factor value:$fector"
echo"divide value:$divide"... (4 Replies)
Discussion started by: Gevni
4 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)