Sponsored Content
Top Forums Shell Programming and Scripting Speeding up shell script with grep Post 302994613 by RudiC on Saturday 25th of March 2017 06:20:42 AM
Old 03-25-2017
Using grep -f works, but with two files as large as indicated will take its (serious) time, and may eventually run out of memory. Try
Code:
sort master.csv new | uniq -d

, then use the resultant file in similar way (uniq -u) to extract unique values from either original file.
Comparison of both approaches on ~20k files:
Code:
time grep -ffile2 file1
real    0m0.352s
user    0m0.280s
sys     0m0.052s
time sort file[12] | uniq -d
real    0m0.037s
user    0m0.032s
sys     0m0.004s

EDIT: Times spent for two files with roughly 4E6 entries each, and about 1E6 lines overlap (on a two processor linux host):
Code:
time sort file[12] | uniq -d > f1
real    0m14.975s
user    0m27.048s
sys     0m0.792s
time sort file1 f1 | uniq -u > f2
real    0m9.331s
user    0m16.488s
sys     0m0.572s


Last edited by RudiC; 03-25-2017 at 01:22 PM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

grep in Shell script

Hello I do want to write a script which will check any errors say "-error" in the log file then have to send email to the concern person . And the concern person will correct the error . Next time if the script runs eventhough the error has been corrected it will ... (1 Reply)
Discussion started by: Krishnaramjis
1 Replies

2. UNIX for Dummies Questions & Answers

Speeding up a Shell Script (find, grep and a for loop)

Hi all, I'm having some trouble with a shell script that I have put together to search our web pages for links to PDFs. The first thing I did was: ls -R | grep .pdf > /tmp/dave_pdfs.outWhich generates a list of all of the PDFs on the server. For the sake of arguement, say it looks like... (8 Replies)
Discussion started by: Dave Stockdale
8 Replies

3. Shell Programming and Scripting

grep'ing and sed'ing chunks in bash... need help on speeding up a log parser.

I have a file that is 20 - 80+ MB in size that is a certain type of log file. It logs one of our processes and this process is multi-threaded. Therefore the log file is kind of a mess. Here's an example: The logfile looks like: "DATE TIME - THREAD ID - Details", and a new file is created... (4 Replies)
Discussion started by: elinenbe
4 Replies

4. Shell Programming and Scripting

How to grep sql error in shell script and exit the script?

I need help in the following script. I want to grep the sql errors insert into the error table and exit the shell script if there is any error, otherwise keep running the scripts. Here is my script #!/bin/csh -f source .orapass set user = $USER set pass = $PASS cd /opt/data/scripts echo... (2 Replies)
Discussion started by: allinshell99
2 Replies

5. Shell Programming and Scripting

Shell Script with Grep

Hi guys - below is my script that is checking for current file, size and timestamp. However I added a "grep" feature in it (line in red), but not getting the desired result. I am trying to acheive in output: 1. Show me the file name, timestamp, size and grep'ed words It would be a... (2 Replies)
Discussion started by: DallasT
2 Replies

6. UNIX for Dummies Questions & Answers

Speeding/Optimizing GREP search on CSV files

Hi all, I have problem with searching hundreds of CSV files, the problem is that search is lasting too long (over 5min). Csv files are "," delimited, and have 30 fields each line, but I always grep same 4 fields - so is there a way to grep just those 4 fields to speed-up search. Example:... (11 Replies)
Discussion started by: Whit3H0rse
11 Replies

7. Shell Programming and Scripting

speeding up bash script with "while read line"

Hello everybody, I'm still slowly treading my way into bash scripting (without any prior programming experience) and hence my code is mostly what some might call "creative" if they meant well :D I have created a script that serves its purpose but it does so very slowly, since it needs to work... (4 Replies)
Discussion started by: origamisven
4 Replies

8. Shell Programming and Scripting

Help speeding up script

This is my first experience writing unix script. I've created the following script. It does what I want it to do, but I need it to be a lot faster. Is there any way to speed it up? cat 'Tax_Provision_Sample.dat' | sort | while read p; do fn=`echo $p|cut -d~ -f2,4,3,8,9`; echo $p >> "$fn.txt";... (20 Replies)
Discussion started by: JohnN6
20 Replies

9. Shell Programming and Scripting

Help 'speeding' up this 'parsing' script - taking 24+ hours to run

Hi, I've written a ksh script that read a file and parse/filter/format each line. The script runs as expected but it runs for 24+ hours for a file that has 2million lines. And sometimes, the input file has 10million lines which means it can be running for more than 2 days and still not finish.... (9 Replies)
Discussion started by: newbie_01
9 Replies

10. Shell Programming and Scripting

Help with speeding up my working script to take less time - how to use more CPU usage for a script

Hello experts, we have input files with 700K lines each (one generated for every hour). and we need to convert them as below and move them to another directory once. Sample INPUT:- # cat test1 1559205600000,8474,NormalizedPortInfo,PctDiscards,0.0,Interface,BG-CTA-AX1.test.com,Vl111... (7 Replies)
Discussion started by: prvnrk
7 Replies
LR_ENVIRONMENT.IN(1)					  LogReport's Lire Documentation				      LR_ENVIRONMENT.IN(1)

NAME
lr_environment - Export Lire configuration in shell script form SYNOPSIS
eval `lr_environment` DESCRIPTION
The lr_environment command is used to import the Lire configuration in Lire shell scripts. All of Lire configuration variables will be written in a format that can be evaled by the shell. Shell scripts don't usually have to use that command, since it is done by the defaults file sourced by each command. The old names used by when the configuration was done in shell script are also exported by this script for backward compatibility. AUTHOR
Francis J. Lacoste <flacoste@logreport.org> VERSION
$Id: lr_environment.in,v 1.12 2006/07/23 13:16:33 vanbaal Exp $ COPYRIGHT
Copyright (C) 2003 Stichting LogReport Foundation LogReport@LogReport.org This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program (see COPYING); if not, check with http://www.gnu.org/copyleft/gpl.html. Lire 2.1.1 2006-07-23 LR_ENVIRONMENT.IN(1)
All times are GMT -4. The time now is 04:50 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy