The above command works great except when I use my actual datasets, the output is blank. They are the exact same file formats
NA12878_GIAB_highconf is file2 in the example
~80MB
IDP.txt is file1 in the example
~3MB
I was able to decrease the size but they are still too large to attach. Thank you .
Last edited by cmccabe; 12-21-2016 at 03:16 PM..
Reason: fixed format
Hi, i've two files (file1, file2) i want to take value (in column1) and search in file2 if the they match print the value from file2.
this is what i have so far.
awk 'FILENAME=="file1"{ arr=$1 }
FILENAME=="file2"
{print $0}
' file1 file2 (2 Replies)
Hi All,
as you can see I'm pretty new to this board. :D
I'm struggling around with small script to search a few fields in another file.
Basically I have file1 looking like this:
15:38:28 sz:10001 pr:14.16
15:38:28 sz:10002 pr:18.41
15:38:29 sz:10003 pr:19.28
15:38:30 sz:10004... (1 Reply)
hi,
I have two xml files with the name source.xml and tobe_replaced.xml.
Sample data:
source.xml contains:
<?xml version="1.0"?>
<product description="prod1" product_info="some/info">
<product description="prod2" product_info="xyz/allinfo">
<product description="abc/partialinfo"... (2 Replies)
First, thanks for the help in previous posts... couldn't have gotten where I am now without it!
So here is what I have, I use AWK to match $1 and $2 as 1 string in file1 to $1 and $2 as 1 string in file2. Now I'm wondering if I can extend this AWK command to incorporate the following:
If $1... (4 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Hi Freinds,
i have a file1 as below
file1
1|ndmf|fdd|d3484|34874
2|jdehf|wru7|478|w489
3|dfkj|wej|484|49894
file2 contains lakhs of records and not in sorted order
i want to retrive only the records from file2 by searcing the first field of file 1
i used
grep ^1 file2... (4 Replies)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
Trying to use awk to:
update $2 in file2 with the $2 value in file1, if $1 in file1 matches $13 in file2, which is tab-delimeted. The $2values may already be the same so in that case nothing happens and the next line is processed.
There are exactly 4,605 unique $13 values. Thank you :).
... (4 Replies)
In the awk below I am trying to set/update the value of $14 in file2 in
bold, using the matching NM_ in $12 or $9 in file2
with the NM_ in $2 of file1.
The lengths of $9 and $12 can be variable but what is consistent is the start pattern
will always be NM_ and the end pattern is always ;... (2 Replies)