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Top Forums Shell Programming and Scripting User input and run awk using the input Post 302967397 by cmccabe on Tuesday 23rd of February 2016 10:54:05 AM
Old 02-23-2016
I updated the portion of code and it does seem to append the entered genes to a file GENE.txt. The problem is even though each line is one a new line a space is put in after wach so no calculation results.

PTPN11,SCN1A,FBN1

GENE.txt looks like
Code:
PTPN11
SCN1A
FBN1

.

However, if there is only one gene entered PTPN11 then the calculation works fine.

I apologize about the indenting, I am a scientist and not a programmer. Can you recommend some books on correct indentation? Thank you Smilie.

Code:
other() {
printf "\n\n"
printf "%s \n" "Please enter gene(s), use a comma between multiple:"
OLDIFS=$IFS
IFS=","
read -a genes
for (( i = 0; i < ${#genes[@]}; i++ ))
    do
    printf "%s \n" "${genes[$i]}" >> /home/cmccabe/Desktop/panels/GENE.txt
    done
IFS=$OLDIFS


Last edited by cmccabe; 02-23-2016 at 03:17 PM.. Reason: updated code
 

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IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME
igawk - gawk with include files SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ... igawk [ all gawk options ] [ -- ] program-text file ... DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1). AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like @include getopt.awk in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path. OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports. EXAMPLES
cat << EOF > test.awk @include getopt.awk BEGIN { while (getopt(ARGC, ARGV, "am:q") != -1) ... } EOF igawk -f test.awk SEE ALSO
gawk(1) Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995. AUTHOR
Arnold Robbins (arnold@skeeve.com). Free Software Foundation Nov 3 1999 IGAWK(1)
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