What I thought would be an extremely simple project has proven more difficult for me than I thought. Here are the parameters:
Thus far, I've been able to sort the final grades, but I'm having a lot of trouble with appending the correlating letter grade to the end of each line. Any help would be... (3 Replies)
Dear fellow members,
I've just joined the forum and am a newbie to shell scripting and programming. I'm stuck on the following problem.
I'm working with large scale genomic data and need to do some analyses on it. Essentially it is text processing problem, so please don't mind the scientific... (0 Replies)
How can I find the regions between specific lines?
I have a file which contains lines like this:
chr1 0 17388 0
chr1 17388 17444 1
chr1 17444 17599 2
chr1 17599 17601 1
chr1 17601 569791 0
chr1 569791 569795 1
chr1 569795 569808 2
chr1 569808 569890 3
chr1 569890 570047 4 ... (9 Replies)
Hi,
I would like to know how can I get the ID of a feature if its genomic coordinates overlap the coordinates of another file. Example:
Get the 4th column (ID) of this file1:
chr1 10 100 gene1
chr2 3000 5000 gene2
chr3 200 1500 gene3
if it overlaps with a feature in this file2:
chr2... (1 Reply)
Dears my rootvg is missed up i can not extend the /opt
as soon as i try to extend the Filesystem its give me that there is not enough space .
as there any way to change the REGION of the LVs in HDISK1 ?
lspv -p hdisk0
hdisk0:
PP RANGE STATE REGION LV NAME TYPE ... (8 Replies)
Dear All,
I have the following file tabulated:
ID distanceTSS score
8434 571269 10
10122 393912 9
7652 6 10
4863 1451 9
8419 39 2
9363 564 21
9333 7714 22
9638 8334 9
1638 1231 11
10701 918 1000
6587 32056 111
What I would like to do is the following, create 100 new files based... (5 Replies)
awk '{if(len==0){last=$4;total=$6;len=1;getline}if($4!=last){printf("%s\t%f\n", last, total/len);last=$4;total=$6;len=1}else{total+=$6;len+=1}}END{printf("%s\t%f\n", last, total/len)}' exon.txt > output.txt
In the attached file I am just trying to group all the same names in column $4 and then... (2 Replies)