You're going about this all wrong.
The files you have attached
windows_annovar.sh
windows_annovar.pl
are the same file. You can't just rename files and expect them to run with different interpreters.
This is calling perl table_annovar.pl to access a database (humandb) I think. Do you have all those perl files installed?? If so, perl needs to know where to find them. The full path to the folder that contains them should be in PATH as well as the full path to the perl modules.
PATH belongs in windows_annovar.sh...not this one. Actually, it belongs in the shell environment.
Get rid of this file.
my requirment is
i have to call a batch file from a c++ program
that batch file is called with the argument as print.txt
print.txt is a text file which should get printed on printer (any printer) when a batch file call is made
1) how to call a batch file in c++
2) how to print the text... (1 Reply)
what is a command to call a batch file from a c++ program
when called with the argument which is a text file, then how to print that text file on a printer.
please help me with code if possible (3 Replies)
EDIT: Is this wrong thread?
Hi I am on an Apple Mac and I am trying to run this batch file on my Mac and was wondering if anyone could tell me what a script that will make this run and work on my Mac. I was hoping that you could tell me the script in the shell format?
So here's the batch... (4 Replies)
Hi
I have to create a windows batch file which will read an input file and remove "double quotes" from each line of the file.
For eg.If input file name is abcd.csv and contents is :
"asasd,123123,213213,asd"
"esfrf,dsfsdf,234324,sdfsdf"
Then the batch file should remove "" from the... (11 Replies)
Hi all
I am using tru64 Unix and I want a ready batch file which makes me to change all user passwords at the same time ,instead of changing everyone separately.
Please could anyone help me to do that.
bye. (1 Reply)
Hello everyone. I am new to shell scripting and i am required to create a shell script, the purpose of which i will explain below.
I am on a solaris server btw.
Before delving into the requirements, i will give youse an overview of what is currently in place and its purpose.
... (2 Replies)
Hi all,
What I would like to achieve is to batch change the code below in every pdf in a given directory (each pdf is uncompressed so that can be easily edited).
An example of the javascript code:
if (this.hostContainer) { try { this.hostContainer.postMessage(pp_216', 15259]);... (3 Replies)
Hi guys,
I need a script to change the file names e.g.:-
below are the mentioned files, i want t0 change the last character of the name 00000.cdr with e.g bep01.smsc.191214210500-00000.cdr to bep01.smsc.191214210500-92311.cdr next file be like bep01.smsc.191214210500-92312.cdr
# ls -ltr... (9 Replies)
In the below perl executes if one file is processed perfect. However, when multiple files are processed in batch which is preferred I get the below error that I can not seem to fix it as the '' necessary for the command to execute, but seem to only work for one -arg option. Thank you :).
... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
findbin
FindBin(3perl) Perl Programmers Reference Guide FindBin(3perl)NAME
FindBin - Locate directory of original perl script
SYNOPSIS
use FindBin;
use lib "$FindBin::Bin/../lib";
or
use FindBin qw($Bin);
use lib "$Bin/../lib";
DESCRIPTION
Locates the full path to the script bin directory to allow the use of paths relative to the bin directory.
This allows a user to setup a directory tree for some software with directories "<root>/bin" and "<root>/lib", and then the above example
will allow the use of modules in the lib directory without knowing where the software tree is installed.
If perl is invoked using the -e option or the perl script is read from "STDIN" then FindBin sets both $Bin and $RealBin to the current
directory.
EXPORTABLE VARIABLES
$Bin - path to bin directory from where script was invoked
$Script - basename of script from which perl was invoked
$RealBin - $Bin with all links resolved
$RealScript - $Script with all links resolved
KNOWN ISSUES
If there are two modules using "FindBin" from different directories under the same interpreter, this won't work. Since "FindBin" uses a
"BEGIN" block, it'll be executed only once, and only the first caller will get it right. This is a problem under mod_perl and other
persistent Perl environments, where you shouldn't use this module. Which also means that you should avoid using "FindBin" in modules that
you plan to put on CPAN. To make sure that "FindBin" will work is to call the "again" function:
use FindBin;
FindBin::again(); # or FindBin->again;
In former versions of FindBin there was no "again" function. The workaround was to force the "BEGIN" block to be executed again:
delete $INC{'FindBin.pm'};
require FindBin;
KNOWN BUGS
If perl is invoked as
perl filename
and filename does not have executable rights and a program called filename exists in the users $ENV{PATH} which satisfies both -x and -T
then FindBin assumes that it was invoked via the $ENV{PATH}.
Workaround is to invoke perl as
perl ./filename
AUTHORS
FindBin is supported as part of the core perl distribution. Please send bug reports to <perlbug@perl.org> using the perlbug program
included with perl.
Graham Barr <gbarr@pobox.com> Nick Ing-Simmons <nik@tiuk.ti.com>
COPYRIGHT
Copyright (c) 1995 Graham Barr & Nick Ing-Simmons. All rights reserved. This program is free software; you can redistribute it and/or
modify it under the same terms as Perl itself.
perl v5.14.2 2011-09-26 FindBin(3perl)