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Full Discussion: Considerable trouble with for loop in combination with awk
Top Forums Shell Programming and Scripting Considerable trouble with for loop in combination with awk Post 302901501 by jfern on Wednesday 14th of May 2014 05:36:54 AM
Old 05-14-2014
Considerable trouble with for loop in combination with awk
I have the text file where each line has the format:

chr10 101418889 101418904 0.816327

Right now the interval between column 2 and 3 is 15. I only want the two consecutive positions starting at position 1, write it to a file, then move up one position write to file etc. So that:

File 1: chr10 101418889 101418990 0.816327
File 2: chr10 101418890 101418991 0.816327
File 3: chr10 101418891 101418992 0.816327
and so on...

My code so far:
Code:
for ((i = 0; i <= 14; ++1)) do
awk -v h=$i '{$2 += h; $3 += h-14; print}' original_core_files/lung.core.low.5SitesMin.bed > ../core_motif_singleton_controls/script/$i.bed;
done

The output is a "0.bed" file and a stuck loop.

As you probably see my programming experience is very limited, thank you very much for any form of help!

---------- Post updated at 04:36 AM ---------- Previous update was at 04:29 AM ----------

Solved:
naturally I should have put i++ instead of ++1, is there a way to delete embarrassing threads like this one?
 

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LEARN ABOUT DEBIAN

colorgccrc

COLORGCCRC(5)							File Formats Manual						     COLORGCCRC(5)

NAME

       colorgccrc - configuration file for colorgcc

DESCRIPTION

       A colorgccrc configuration file is used to configure the highlighting of the compiler output from colorgcc.

SYNTAX

       Each  line  consists  of  a  keyword  designating  a configuration variable.  The keyword is followed by `:' and then one or several values
       (depending on the keyword).  Lines beginning with a hash mark `#' are comments.

CONFIGURATION VARIABLES

       g++ | gcc | c++ | cc | g77 | gcj | gnat | gpc
	      Specifies the paths to the compilers.  Takes one value; a path to the compiler.

       nocolor
	      Specifies what terminal types colorization should be disabled on.  Takes one or several values, separated by whitespace.

       srcColor
	      Specifies the highlighting attributes source-code should be given.  Takes one or several color attributes.  See  the  section  COLOR
	      ATTRIBUTES for more information.

       introColor
	      Specifies  the  highlighting  attributes	for normal compiler output.  Takes one or several color attributes.  See the section COLOR
	      ATTRIBUTES for more information.

       warningFileNameColor | errorFileNameColor
	      Specifies the highlighting attributes for the filename in a  warning  or	an  error,  respectively.   Takes  one	or  several  color
	      attributes.  See the section COLOR ATTRIBUTES for more information.

       warningNumberColor | errorNumberColor
	      Specifies  the  highlighting  attributes	for  the  line-number  in a warning or an error, respectively.	Takes one or several color
	      attributes.  See the section COLOR ATTRIBUTES for more information.

       warningMessageColor | errorMessageColor
	      Specifies the highlighting attributes for the message-text in a warning or an error,  respectively.   Takes  one	or  several  color
	      attributes.  See the section COLOR ATTRIBUTES for more information.

COLOR ATTRIBUTES

       The following attributes are valid for highlighting.

       clear, reset

       bold, underline, underscore, blink, reverse, concealed

       black, red, green, yellow, blue, magenta, cyan, white

       on_black, on_red, on_green, on_yellow, on_blue, on_magenta, on_cyan, on_white

SEE ALSO

       gcc(1), colorgcc(1)

HISTORY

       Jan 15 2003: Initial version of this manual-page.

REPORTING BUGS

       Report bugs to <jmoyers@geeks.com>

AUTHORS

       Jamie Moyers <jmoyers@geeks.com> is the author of colorgcc.

       This  manual  page  was	written  by Joe Wreschnig <piman@sacredchao.net>, and modified by David Weinehall <tao@debian.org>, for the Debian
       GNU/Linux system (but may be used by others).

COPYRIGHT

       Copyright (C) 2003 Jamie Moyers
       This is free software; see the source for copying conditions.  There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU-
       LAR PURPOSE.

								   Jan 15, 2003 						     COLORGCCRC(5)
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