hi, i am running a java script on few thousand files (e1.rnk....en.rnk) but manually,. is there any way to run it automatically by changing the output directory (-out) ?
Hi,
I have thousands of files in a directory that have the following 2 formats:
289620178.aln
289620179.aln
289620180.aln
289620183.aln
289620184.aln
289620185.aln
289620186.aln
289620187.aln
289620188.aln
289620189.aln
289620190.aln
289620192.aln....
and:
alnCDS_1.fasta (1 Reply)
I have a script where the the 9th line looks like this:
$filename=sprintf("250.1chr%d.ped", $N);
I want to modify this script 1000 times, changing 250.1chr%d.ped to 250.2chr%d.ped, 250.3chr%.ped.......and so on all the way to 250.1000chr%d.ped and store each output in files called
... (4 Replies)
I have multiple input files that I want to manipulate using a shell script. The files are called 250.1 through 250.1000 but I only want the script to manipulate 250.300 through 250.1000. Before I was using the following script to manipulate the text files:
for i in 250.*; do
|| awk... (4 Replies)
Hello,
So I have approximately 300 files of raw data (.txt) files that I am using to perform statistical analysis. I have been able to construct a Fortran program that is able to perform my statistical analysis on a file by file basis.
However, I now want to be able to loop program through... (19 Replies)
Hi
Am trying to print the PIDs of process in a file and trying to grep any PID from that file
I set the if condition as $value != "PID" and $value != "-"
Assign that number to a variable
Am confused since am using while loop to read the line from file
and again if condition to check those... (2 Replies)
Hi,
I want to read file multiple times. Right now i am using while loop but that is not working.
ex.
While read line
do
while read line2
do
echo stmt1
#processing some data based on data.,
done < file2.txt
done < file1.txt # This will have 10... (4 Replies)
Hi Fellows,
I was wondering how I can remove first few characters from multiple file names without do loop in unix?
e.g.
water123.xyz
water456.xyz
to
123.xyz
456.xyz
Thanks
Paul
Thanks. (3 Replies)
hdr=$(cut -c1 $path$file|head -1)#extract header”H”
trl=$(cut -c|path$file|tail -1)#extract trailer “T”
SplitFile=$(cut -c 50-250 $path 1$newfile |sed'$/ *$//' head -1')# to trim white space and extract table name
If; then # start loop if it is a header
While read I #read file
Do... (4 Replies)
Hello ALL,
need a BASH script who find file and send email with attachment.
I have 50 folders without sub directories in each generated files of different sizes but with a similar name Rp01.txt Rp02.txt Rp03.txt ...etc. Each directors bound by mail group, I need a script that goes as... (1 Reply)
Hi Everybody,
I'm a newbie to shell scripting, and I'd appreciate some help. I have a bunch of .txt files that have some unwanted content. I want to remove lines 1-3 and 1028-1098.
#!/bin/bash
for '*.txt' in <path to folder>
do
sed '1,3 d' "$f";
sed '1028,1098 d' "$f";
done
I... (2 Replies)
Discussion started by: BabyNuke
2 Replies
LEARN ABOUT DEBIAN
mh_installjar
MAVEN(1) User Commands MAVEN(1)NAME
Maven - Installs a jar into /usr/share/maven-repo.
SYNOPSIS
mh_installjar [option]... [pom] [jar] [link]...
DESCRIPTION
Installs the jar file in /usr/share/maven-repo, at the correct location for Maven. The jar is copied into the build directory. It can also
create additional links to the jar, usually located in /usr/share/java.
Where
[pom] is the location of the POM associated with the jar to install.
GroupId, artifactId and version will be extracted from this file.
[jar] is the path to the jar to install, usually located in the build
folder.
[link] is an additional link to the jar to install, usually there should
be a link to usr/share/java/$jar.jar and usr/share/java/$jar-$version.jar to comply with the Java packaging guidelines. Note that
there is no need to specify those particular links if the --java-lib option is used.
OPTIONS -h --help: show this text
-V --version: show the version
-p<package> --package=<package>: name of the Debian package which
will contain this jar file
-e<version>, --set-version=<version>: set the version for the jar,
do not use the version declared in the POM file.
-r<rules> --rules=<rules>: path to the file containing the
rules to apply when cleaning the POM. Optional, the default location is debian/maven.rules Maven rules are used here to extract the
groupId, artifactId and version from the POM file.
-l --java-lib: Optional, if given it will install the jar into
/usr/share/java to comply with the Debian Java specification. The jar will be installed as /usr/share/java/$name-$version.jar and a
versionless link /usr/share/java/$name.jar will point to it, as well as the links installed in /usr/share/maven-repo
-n<name> --usj-name=<name>: Optional, the name to use when installing the
library in /usr/share/java when --java-lib is used. Defaults to the artifact id found in the POM.
-j<version> --usj-version=<version>: Optional, the version to use when
installing the library in /usr/share/java when --java-lib is used. Defaults to the version found in the POM.
-s --no-usj-versionless: Optional, don't install the versionless link
in /usr/share/java. This flag is used only when the -l or --java-lib option is given.
-d<path> --dest-jar=<path>: Optional, the destination for the real jar.
The other places where the jar appears, in the repository or in the list of links, will be symlinks to this jar. Defaults to
/usr/share/java/$name-$version.jar if --java-lib is used, otherwise the jar is installed in the versioned path in the Maven reposi-
tory.
-c<classifier> --classifier=<classifier>: Optional, the classifier for
the jar. Empty by default.
-v --verbose: show more information while running
-n --no-act: don't actually do anything, just print the results
--skip-clean-pom: don't clean the pom, assume that a previous action ran
mh_cleanpom with the correct options. mh_cleanpom is run only to extract the groupId, artifactId and version of the jar
See also: mh_installpom(1), mh_installsite(1)Maven Repo Helper version 1.7.1 January 2012 MAVEN(1)