Sponsored Content
Top Forums Shell Programming and Scripting Merge files based on both common and uncommon rows Post 302878151 by Scrutinizer on Wednesday 4th of December 2013 05:07:23 PM
Old 12-04-2013
Try something like:
Code:
awk -F\| 'NR==FNR{A[$1]=$2; next} {print $1, A[">" $1]}' file2 file1

Code:
ABC chr15:176578-187678[-]: ['CCTGCGT']
XYZ 
PQR chr3:14567-15866[+]: ['CCTYHGV','TLKJNWYT',TTGCDGT']

Do you need to get the colon removed as well?
These 2 Users Gave Thanks to Scrutinizer For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

merge based on common, awk help

All, $ cat x.txt z 11 az x 12 ax y 13 ay $ cat y.txt ay TT ax NN Output required: y 13 ay TT x 12 ax NN (3 Replies)
Discussion started by: jkl_jkl
3 Replies

2. Shell Programming and Scripting

merge rows based on a common column

Hi guys, Please guide me if you have a solution to this problem. I have tried paste -s but it's not giving the desired output. I have a file with the following content- A123 box1 B345 bat2 C431 my_id A123 service C431 box1 A123 my_id I need two different outputs- OUTPUT1 A123... (6 Replies)
Discussion started by: smriti_shridhar
6 Replies

3. Shell Programming and Scripting

Merge files of differrent size with one field common in both files using awk

hi, i am facing a problem in merging two files using awk, the problem is as stated below, file1: A|B|C|D|E|F|G|H|I|1 M|N|O|P|Q|R|S|T|U|2 AA|BB|CC|DD|EE|FF|GG|HH|II|1 .... .... .... file2 : 1|Mn|op|qr (2 Replies)
Discussion started by: shashi1982
2 Replies

4. Shell Programming and Scripting

"Join" or "Merge" more than 2 files into single output based on common key (column)

Hi All, I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations: 1. I am restrained to 2 input files only. 2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Discussion started by: Katabatic
1 Replies

5. Shell Programming and Scripting

merge two text files of different size on common index

I have two text files. text file 1: ID filePath col1 col2 col3 1 10584588.mol 269.126 190.958 23.237 2 10584549.mol 281.001 200.889 27.7414 3 10584511.mol 408.824 158.316 29.8561 4 10584499.mol 245.632 153.241 25.2815 5 10584459.mol ... (8 Replies)
Discussion started by: LMHmedchem
8 Replies

6. UNIX for Dummies Questions & Answers

Merge rows with common column

Dear all I have big file with two columns A_AA960715 GO:0006952 A_AA960715 GO:0008152 A_AA960715 GO:0016491 A_AA960715 GO:0007165 A_AA960715 GO:0005618 A_AA960716 GO:0006952 A_AA960716 GO:0005618 A_AA960716... (15 Replies)
Discussion started by: AAWT
15 Replies

7. UNIX for Dummies Questions & Answers

Merge two files with common IDs but unequal number of rows

Hi, I have two files that I would like to merge and think that there should be a solution using awk. The files look something like this: file 1 IDX1 IDY1 IDX2 IDY2 IDX3 IDY3 file 2 IDY1 dataA data1 IDY2 dataB data2 IDY3 dataC data3 Desired output IDX1 IDY1 dataA data1 IDX2 ... (5 Replies)
Discussion started by: katie8856
5 Replies

8. Shell Programming and Scripting

file merge based on common columns

I have two files 1.txt 34, ABC, 7, 8, 0.9 35, CDE, 6.5, -2, 0.01 2.txt 34, ABC, 9, 6, -1.9 35, CDE, 8.5, -2.3, 5.01 So in both files common columns are 1 and 2 so final o/p should look like 34, ABC, 7, 8, 0.9, 9, 6, -1.9 35, CDE, 6.5, -2, 0.01, 8.5, -2.3, 5.01 I tried using... (3 Replies)
Discussion started by: manas_ranjan
3 Replies

9. Shell Programming and Scripting

Merge multiple files with common header

Hi all, Say i have multiple files x1 x2 x3 x4, all with common header (date, time, year, age),, How can I merge them to one singe file "X" in shell scripting Thanks for your suggestions. (2 Replies)
Discussion started by: msarguru
2 Replies

10. UNIX for Dummies Questions & Answers

Merge selective columns from files based on common key

Hi, I am trying to selectively merge two files based on keys reported in the 1st column. File1: #file1-header1 file1-header2 111 qwe rtz uio 198 asd fgh jkl 165 yxc 789 poi uzt rew 89 lkj File2: #file2-header2 file2-header2 165 ghz nko2 ... (2 Replies)
Discussion started by: dovah
2 Replies
Locale::Codes::LangExt(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangExt(3pm)

NAME
Locale::Codes::LangExt - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangExt; $lext = code2langext('acm'); # $lext gets 'Mesopotamian Arabic' $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langext_codes(); @names = all_langext_names(); DESCRIPTION
The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langext('acm','alpha'); $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic. This is the default code set. ROUTINES
code2langext ( CODE [,CODESET] ) langext2code ( NAME [,CODESET] ) langext_code2code ( CODE ,CODESET ,CODESET2 ) all_langext_codes ( [CODESET] ) all_langext_names ( [CODESET] ) Locale::Codes::LangExt::rename_langext ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangExt::add_langext ( CODE ,NAME [,CODESET] ) Locale::Codes::LangExt::delete_langext ( CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_alias ( NAME ,NEW_NAME ) Locale::Codes::LangExt::delete_langext_alias ( NAME ) Locale::Codes::LangExt::rename_langext_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::delete_langext_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2013-11-04 Locale::Codes::LangExt(3pm)
All times are GMT -4. The time now is 10:32 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy