Remove duplicates based on query and subject fields from blast output file
Hi all
I have a blast outfile file like this :
and so on
I want the output to be as:
Can someone Please, help me in writing a script using Python ? SORRY, I am just a beginner !!
Thanks in advance !
Hi,
How to output the duplicate record to another file. We say the record is duplicate based on a column whose position is from 2 and its length is 11 characters.
The file is a fixed width file.
ex of Record:
DTYU12333567opert tjhi kkklTRG9012
The data in bold is the key on which... (1 Reply)
Hi All,
I needs to fetch unique records based on a keycolumn(ie., first column1) and also I needs to get the records which are having max value on column2 in sorted manner... and duplicates have to store in another output file.
Input :
Input.txt
1234,0,x
1234,1,y
5678,10,z
9999,10,k... (7 Replies)
Hi,
I am unable to search the duplicates in a file based on the 1st,2nd,4th,5th columns in a file and also remove the duplicates in the same file.
Source filename: Filename.csv
"1","ccc","information","5000","temp","concept","new"
"1","ddd","information","6000","temp","concept","new"... (2 Replies)
Hello,
I am new to shell scripting. I have a huge file with multiple columns for example:
I have 5 columns below.
HWUSI-EAS000_29:1:105 + chr5 76654650 AATTGGAA HHHHG
HWUSI-EAS000_29:1:106 + chr5 76654650 AATTGGAA B@HYL
HWUSI-EAS000_29:1:108 + ... (4 Replies)
Hi,
I have a file with fields like below:
A;XYZ;102345;222
B;XYZ;123243;333
C;ABC;234234;444
D;MNO;103345;222
E;DEF;124243;333
desired output:
C;ABC;234234;444
D;MNO;103345;222
E;DEF;124243;333
ie, if the 4rth field is a duplicate.. i need only those records where... (5 Replies)
Hi All,
I have a text file with three columns. I would like a simple script that removes lines in which column 1 has duplicate entries, but use the largest value in column 3 to decide which one to keep. For example:
Input file:
12345a rerere.rerere len=23
11111c fsdfdf.dfsdfdsf len=33 ... (3 Replies)
I am trying to see if I can use awk to remove duplicates from a file. This is the file:
-==> Listvol <==
deleting /vol/eng_rmd_0941
deleting /vol/eng_rmd_0943
deleting /vol/eng_rmd_0943
deleting /vol/eng_rmd_1006
deleting /vol/eng_rmd_1012
rearrange /vol/eng_rmd_0943
... (6 Replies)
Dear community,
I have to remove duplicate lines from a file contains a very big ammount of rows (milions?) based on 1st and 3rd columns
The data are like this:
Region 23/11/2014 09:11:36 41752
Medio 23/11/2014 03:11:38 4132
Info 23/11/2014 05:11:09 4323... (2 Replies)
I have /tmp dir with filename as:
010020001_S-FOR-Sort-SYEXC_20160229_2212101.marker
010020001_S-FOR-Sort-SYEXC_20160229_2212102.marker
010020001-S-XOR-Sort-SYEXC_20160229_2212104.marker
010020001-S-XOR-Sort-SYEXC_20160229_2212105.marker
010020001_S-ZOR-Sort-SYEXC_20160229_2212106.marker... (4 Replies)