Can any one give me the idea on replacing multiple blank lines with a single blank line?
Please conside it for a file having more than 100 number of characters.
Regards,
Siba (3 Replies)
This is the problem actually:
This regex:
egrep "low debug.*\".*\"" $dbDir/alarmNotification.log
is looking for data between the two quotation marks:
".*\"
When I hate data like this:
low debug 2009/3/9 8:30:20.47 ICSNotificationAlarm Prodics01ics0003 IC... (0 Replies)
I use this command to find a search (Nr of active alarms are) and print one line before and 10 lines after the search keywords.
nawk 'c-->0;$0~s{if(b)for(c=b+1;c>1;c--)print r;print;c=a}b{r=$0}' b=1 a=10 s="Nr of active alarms are:" *.log
However, I would like to know how to tell it to print... (3 Replies)
Background:
I am writing a script to help me automate tweaks and things I apply to a custom Android rom I developed. I am on the very last part of my script, and I am stuck trying to find the right command to do what I seek.
When I build roms from source, a file called updater-script is... (8 Replies)
Hi
Am confused with the usage of "sed" command
I want to replace a single line with multiple lines of a file..
eg.,
A file has
Hi, How are you?
I need to replace as
Am fine
What are You doing?
I used the script as
string1="Hi, How are you?"
echo "$string1 is the value"... (4 Replies)
Experts,
Can someone help me with the below?
I've a variable called NSPMHOME=some_value. I would like change the value of the variable with another variable and something followed by it.
E.g
From NSPHOME=some_value to NSPMHOME=$SOMETHING/test
$SOMETHING has value /opt/tag .
The end... (4 Replies)
Hello All,
just wanted to export multiple tables from oracle sql using unix shell script to csv file and the below code is exporting only the first table.
Can you please suggest why? or any better idea?
export FILE="/abc/autom/file/geo_JOB.csv"
Export= `sqlplus -s dev01/password@dEV3... (16 Replies)
Discussion started by: Hope
16 Replies
LEARN ABOUT DEBIAN
bio::updateableseqi
Bio::UpdateableSeqI(3pm) User Contributed Perl Documentation Bio::UpdateableSeqI(3pm)NAME
Bio::UpdateableSeqI - Descendant of Bio::SeqI that allows updates
SYNOPSIS
See Bio::SeqI for most of the documentation. See the documentation of the methods for further details.
DESCRIPTION
Bio::UpdateableSeqI is an interface for Sequence objects which are expected to allow users to perform basic editing functions
(update/delete) on their component SeqFeatures.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
CONTRIBUTORS
Ewan Birney forced me to this...
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
delete_feature
Title : delete_feature
Usage : my $orphanlist=$self->delete_feature($feature,$transcript,$gene);
Function: deletes the specified $feature from the given transcript, if $transcript is sent and exists and $feature is a feature of $transcript,
or from $gene if the $feature is a feature of $gene, or from $self if $transcript and $gene are not sent. Keeps track of the features
of the $gene object that may be left as orphans and returns them as a listref.
Example : I want to delete transcript 'abc' of gene 'def', with three exons, leaving only transcript 'ghi' with two exons.
This will leave exons 1 and 3 part of 'ghi', but exon 2 will become an orphan.
my $orphanlist=$seq->delete_feature($transcript{'abc'},undef,$gene{'def'});
$orphanlist is a reference to a list containing $exon{'2'};
Returns : a listref of orphaned features after the deletion of $feature (optional)
Args : $feature - the feature to be deleted
$transcript - the transcript containing the $feature, so that a $feature can be removed from only one transcript when there are multiple
transcripts in a gene.
$gene - the gene containing the $transcript and/or the $feature
perl v5.14.2 2012-03-02 Bio::UpdateableSeqI(3pm)