Visit Our UNIX and Linux User Community

Full Discussion: Re-ordering data
Top Forums Shell Programming and Scripting Re-ordering data Post 302502113 by Chubler_XL on Monday 7th of March 2011 12:16:03 AM
Old 03-07-2011
How about this:

Code:
awk '
BEGIN { OFS="\t" ; print "qqq", "start", "end", "strand", "zzFactor", "ttt", "cut-off", "seq_position", "kmer_location", "k-mer", "Score" }
/^gg18/ {split($0,f,"_"); s=f[3];strand=f[4];qqq=f[2]; zzz=f[5]; }
/^zzz Factor: /&&s {gsub(",","");zzz=$3;ttt=$5;cutoff=$7}
n { print qqq,s,"",strand,zzz,ttt,cutoff,$1,$2,$3,$4; s=n=0 }
/^seqe/&&s { n=1 }' infile

 
Test Your Knowledge in Computers #6
Difficulty: Easy
Unix was first released more than 10 years before Windows.
True or False?

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

proper ordering of o/p values

Hi, Below is my script which creates a file: #!/bin/sh if then echo "Enter bill period " echo "Syntax: sh cpd.sh G08" exit fi sqlplus uname/pwd@dbname <<EOF set WRAP off set FEEDBACK off set PAGESIZE 0 set VERIFY off (14 Replies)
Discussion started by: ss_ss
14 Replies

2. Shell Programming and Scripting

File ordering by portion of filename

Hi, Lets say I have a few xml files: 1234567894.xml abc_1234567895.xml abc_000_1234567890.xml abc_0000000_1234567893.xml 684_abc_000_1234567899.xml The naming convention of the files is: xxxxx_timestamp.xml OR timestamp.xml where x can be anything and I would like to order them by... (4 Replies)
Discussion started by: Leion
4 Replies

3. Homework & Coursework Questions

word ordering problem HELP please (linux)

Hi guys I need you ,please help me i have to do this for tomorow and i don't understand how to do Q1 : Order the words of RADIO.txt by frequency Q2 : Order the words of RADIO.txt in alphabétique order Q3 : Order the words of RADIO.txt par ordre "rhymique" (exemple, put togeder words which are... (1 Reply)
Discussion started by: Lili
1 Replies

4. Shell Programming and Scripting

ordering a data file

With an input file like this: How can I get an output like this? (In the quoted examples, the "_" sign represents an empty space) Note that there are some minus signs and no spaces, in the example above the first character of the first line is an empty space, so each number spans 10... (16 Replies)
Discussion started by: lego
16 Replies

5. Shell Programming and Scripting

Re ordering lines - Awk

Is it possible to re-order certain rows as columns (of large files). Few lines from the file for reference. input Splicing Factor: Tra2beta, Motif: aaguguu, Cutoff: 0.5000 Sequence Position Genomic Coordinate K-mer Score 97 chr1:67052604 uacuguu 0.571 147... (3 Replies)
Discussion started by: quincyjones
3 Replies

6. Shell Programming and Scripting

ordering

file1 1 SNP2 3 1 SNP3 3 1 SNP5 4 2 SNP1 4 2 SNP4 4 file2 SNP1 1 1 1 SNP5 5 5 5 SNP4 4 4 4 SNP2 2 2 2 SNP3 1 1 1 desired output (1 Reply)
Discussion started by: johnkim0806
1 Replies

7. Shell Programming and Scripting

Random ordering

1 2 4 5 3 I would like to use a script so that i can randomly rearrange these numbers such as 3 5 2 4 1 Thanks! (3 Replies)
Discussion started by: johnkim0806
3 Replies

8. Shell Programming and Scripting

Ordering Folders having Date as Names

Hi All, I have directories under /development/arun/weekly/ 20120421 20120414 . . . . I need to arrange these directories in descending order. folder name with recent date will be on top and then others. (1 Reply)
Discussion started by: Arun Mishra
1 Replies

9. Shell Programming and Scripting

Ordering batch number

Hi, Could some one please help to order the batch number in sequence. I will be getting bunch of files with batch number in folder1 which are not in sequence. I need to move all files from folder1 to folder2 with batch number in sequence. Header record looks like PROCESS1... (8 Replies)
Discussion started by: zooby
8 Replies

10. Shell Programming and Scripting

Bash - re-ordering list of parameters

Hello. I have a script that writes parameters in alphabetic order. But I have a parameter which have 3 lines. There is no continuation character ( '\' ). Each of the three lines finish with 'cr'. But line 2 and 3 of the concerning parameter start with a tab char (but should be one or more... (7 Replies)
Discussion started by: jcdole
7 Replies
SLEEP(1)						    BSD General Commands Manual 						  SLEEP(1)

NAME
sleep -- suspend execution for an interval of time SYNOPSIS
sleep seconds DESCRIPTION
The sleep command suspends execution for a minimum of seconds. If the sleep command receives a signal, it takes the standard action. IMPLEMENTATION NOTES
The SIGALRM signal is not handled specially by this implementation. The sleep command will accept and honor a non-integer number of specified seconds (with a '.' character as a decimal point). This is a non- portable extension, and its use will nearly guarantee that a shell script will not execute properly on another system. EXIT STATUS
The sleep utility exits 0 on success, and >0 if an error occurs. EXAMPLES
To schedule the execution of a command for x number seconds later (with csh(1)): (sleep 1800; sh command_file >& errors)& This incantation would wait a half hour before running the script command_file. (See the at(1) utility.) To reiteratively run a command (with the csh(1)): while (1) if (! -r zzz.rawdata) then sleep 300 else foreach i (`ls *.rawdata`) sleep 70 awk -f collapse_data $i >> results end break endif end The scenario for a script such as this might be: a program currently running is taking longer than expected to process a series of files, and it would be nice to have another program start processing the files created by the first program as soon as it is finished (when zzz.rawdata is created). The script checks every five minutes for the file zzz.rawdata, when the file is found, then another portion processing is done courteously by sleeping for 70 seconds in between each awk job. SEE ALSO
nanosleep(2), sleep(3) STANDARDS
The sleep command is expected to be IEEE Std 1003.2 (``POSIX.2'') compatible. HISTORY
A sleep command appeared in Version 4 AT&T UNIX. BSD
April 18, 1994 BSD

Featured Tech Videos

All times are GMT -4. The time now is 11:47 PM.
Unix & Linux Forums Content Copyright 1993-2021. All Rights Reserved.
Privacy Policy