Hi, All,
I wonder how to change the field separator of grep from : to space when use grep to display.
for example when I use
grep -e 'pattern1' -e 'pattern2' -n filename
to find patterns, it use : to separate patterns, but I want to use blank space. is there an option I can set to... (2 Replies)
Hii... Every One......
I want to grep multiple patterns with space in between them.
For eg : I have a file which contains following :
red cat
every one
new one
you are
an ox
take one
Now, what I want to do is to grep " you are" , "an ox" and "red cat" from this file.
Any help........ (5 Replies)
Hi,
i have to search for a char like that :
export var1="i am not happy /not happy"
with a command like :
grep $var1 file
but this not working with me !!!
thank you in advance. (2 Replies)
Hello All,
I am trying to match white space in patterns through - Grep
I tried ] & ] but none of them worked.
Then I tried Perl extension '\s' and it worked.
So just wanted to know if ] & ] are still supported or have they become deprecated.
However they have been mentioned in the... (3 Replies)
Hi,
I want to know how to grep space.
Eg: input file contains
1565432 432 546
3514432 432 545
6541332 432 354
5464412 565 355
8456145 546 534
5632465 432 654
From this i need output of the lines which has 432 which are bold.
My requirement is whenever 432 comes... (3 Replies)
Hi Expert,
Kindly request for your expertise in this matter.
I have below output:
12.125.124.173,xx1.common.com
12.125.124.174,xx2.common.com
12.125.124.175,xx3.common.com
12.125.124.176,
12.125.124.177,
12.125.124.178,
12.125.124.179,xx4.common.com
12.125.124.180,xx5.common.com... (8 Replies)
Hey guys,
I'm having a bit of trouble getting this to work using either sed or grep. It's possible awk might be the ticket I need as well, but my regulat expression skills aren't quite up to the task for doing this.
I'm looking to grep for the string ERROR from the following log up until any... (6 Replies)
here in the below code just a space between 'Info' and '(' is showing that the patter doesnt match...
echo "CREATE TABLE Info (" | grep -i "CREATE TABLE Info (" | wc | awk -F' ' '{print $1}'
1
echo "CREATE TABLE Info (" | grep -i "CREATE TABLE Info (" | wc | awk -F' ' '{print $1}'
0
... (9 Replies)
Hi All,
Need help to grep blank and copy to file. I have a file in below format
dns1dm06_10,
dns2dm02_04,
dbidub,10000000c9a46d0c
gbpuhci,10000000c948b00a
ibtur001,10000000c9a1ccda
yubkbtp1,10000000c93fec5b
I need to copy to all lines which doesn't have wwn >> no-wwn.txt
1... (2 Replies)
see I have a text like:
27-MAY 14:00 4 aaa 5.30 0.01
27-MAY 14:00 3 aaa 0.85 0.00
27-MAY 14:00 2 aaa 1.09 0.00
27-MAY 14:00 5 aaa 0.03 0.00
27-MAY 14:00... (3 Replies)
Discussion started by: netbanker
3 Replies
LEARN ABOUT DEBIAN
seqstat
seqstat(1) Biosquid Manual seqstat(1)NAME
seqstat - show statistics and format for a sequence file
SYNOPSIS
seqstat [options] seqfile
DESCRIPTION
seqstat reads a sequence file seqfile and shows a number of simple statistics about it.
The printed statistics include the name of the format, the residue type of the first sequence (protein, RNA, or DNA), the number of
sequences, the total number of residues, and the average and range of the sequence lengths.
OPTIONS -a Show additional verbose information: a table with one line per sequence showing name, length, and description line. These lines are
prefixed with a * character to enable easily grep'ing them out and sorting them.
-h Print brief help; includes version number and summary of all options, including expert options.
-B (Babelfish). Autodetect and read a sequence file format other than the default (FASTA). Almost any common sequence file format is
recognized (including Genbank, EMBL, SWISS-PROT, PIR, and GCG unaligned sequence formats, and Stockholm, GCG MSF, and Clustal align-
ment formats). See the printed documentation for a complete list of supported formats.
EXPERT OPTIONS --informat <s>
Specify that the sequence file is in format <s>, rather than the default FASTA format. Common examples include Genbank, EMBL, GCG,
PIR, Stockholm, Clustal, MSF, or PHYLIP; see the printed documentation for a complete list of accepted format names. This option
overrides the default expected format (FASTA) and the -B Babelfish autodetection option.
--quiet
Suppress the verbose header (program name, release number and date, the parameters and options in effect).
SEE ALSO afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),
weight(1).
AUTHOR
Biosquid and its documentation are Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU
General Public License (GPL) See COPYING in the source code distribution for more details, or contact me.
Sean Eddy
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
Phone: 1-314-362-7666
FAX : 1-314-362-2157
Email: eddy@genetics.wustl.edu
Biosquid 1.9g January 2003 seqstat(1)