Sponsored Content
Top Forums Shell Programming and Scripting Extract all the content after a specific data Post 302368529 by patrick87 on Thursday 5th of November 2009 03:43:49 AM
Old 11-05-2009
sad Smilie
don't know why I can't get my desired output result Smilie
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Shell script or command help to extract specific contents from a long list of content

Hi, I got a long list of contents: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies

2. Shell Programming and Scripting

Extract specific content from a file

My input file: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF SDGFDGSFDGSGSDGSDGSDGSDGSDG My... (22 Replies)
Discussion started by: patrick87
22 Replies

3. Shell Programming and Scripting

Extract specific data content from a long list of data

My input: Data name: ABC001 Data length: 1000 Detail info Data Direction Start_time End_time Length 1 forward 10 100 90 1 forward 15 200 185 2 reverse 50 500 450 Data name: XFG110 Data length: 100 Detail info Data Direction Start_time End_time Length 1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies

4. Shell Programming and Scripting

Extract specific read from a data

Input file: #abc_1 SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS Output file: FASFGGDSGDS I just want to print out the read from position 5 until position 15 from the data. Below is the code that I just try but it is failed to get my desired output: grep -v '#' input_file | awk... (5 Replies)
Discussion started by: patrick87
5 Replies

5. Shell Programming and Scripting

Way to extract detail and its content above specific value problem asking

Input file: >position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344 MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA NRTS* >position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies

6. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

7. Shell Programming and Scripting

Extract specific data and change its arrangment

Input: HS04636 PROGRAM source 836 7001 + ID=g1 HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1 HS04636 PROGRAM position 836 836 + Parent=g1.t1 HS04636 PROGRAM type 836 1017 + Parent=g1.t1 HS04636 ... (2 Replies)
Discussion started by: patrick87
2 Replies

8. Shell Programming and Scripting

Extract all content that match exactly only specific word

Input: 21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set; 21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11; 21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies

9. Shell Programming and Scripting

How to extract specific data?

Bash scripting beginner here... I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then extract the data only from subjects who have no files missing. I tried to output the ls command, but... (4 Replies)
Discussion started by: LeftoverStew
4 Replies

10. Shell Programming and Scripting

How-To Extract specific data from a file.

data.txt has several information like the below.. <SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01 <WEBER>:CANES:https-web01,https-web02:/web/apps/https-web01/config <SERVER>:WEB:MYDOM07:/tmp/cong/MYDOM07,/tmp/app/MYDOM07... (7 Replies)
Discussion started by: mohtashims
7 Replies
git-annex-shell(1)					      General Commands Manual						git-annex-shell(1)

NAME
git-annex-shell - Restricted login shell for git-annex only SSH access SYNOPSIS
git-annex-shell [-c] command [params ...] DESCRIPTION
git-annex-shell is a restricted shell, similar to git-shell, which can be used as a login shell for SSH accounts. Since its syntax is identical to git-shell's, it can be used as a drop-in replacement anywhere git-shell is used. For example it can be used as a user's restricted login shell. COMMANDS
Any command not listed below is passed through to git-shell. Note that the directory parameter should be an absolute path, otherwise it is assumed to be relative to the user's home directory. Also the first "/~/" or "/~user/" is expanded to the specified home directory. configlist directory This outputs a subset of the git configuration, in the same form as git config --list inannex directory [key ...] This checks if all specified keys are present in the annex, and exits zero if so. dropkey directory [key ...] This drops the annexed data for the specified keys. recvkey directory key This runs rsync in server mode to receive the content of a key, and stores the content in the annex. sendkey directory key This runs rsync in server mode to transfer out the content of a key. commit directory This commits any staged changes to the git-annex branch. It also runs the annex-content hook. OPTIONS
Most options are the same as in git-annex. The ones specific to git-annex-shell are: --uuid=UUID git-annex uses this to specify the UUID of the repository it was expecting git-annex-shell to access, as a sanity check. HOOK
After content is received or dropped from the repository by git-annex-shell, it runs a hook, .git/hooks/annex-content (or hooks/annex-con- tent on a bare repository). The hook is not currently passed any information about what changed. ENVIRONMENT
GIT_ANNEX_SHELL_READONLY If set, disallows any command that could modify the repository. GIT_ANNEX_SHELL_LIMITED If set, disallows running git-shell to handle unknown commands. SEE ALSO
git-annex(1) git-shell(1) AUTHOR
Joey Hess <joey@kitenet.net> <http://git-annex.branchable.com/> git-annex-shell(1)
All times are GMT -4. The time now is 04:33 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy