11-05-2009
Hi,
I just found out that the code that you suggested also will print out the content of seq_81,seq_800,etc
Do you have any idea just only specific and only print out the content that matched with seq_8?
Thanks a lot ^^
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Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
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My input file:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG
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My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
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Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
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MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA
ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA
NRTS*
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Input file 1:
>pattern_5
GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF
ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT
SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW
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HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
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HS04636 PROGRAM type 836 1017 + Parent=g1.t1
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21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11;
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data.txt has several information like the below..
<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
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LEARN ABOUT DEBIAN
hotswaprc
HOTSWAPRC(5) File Formats Manual HOTSWAPRC(5)
NAME
hotswaprc - configuration file for hotswap
DESCRIPTION
/etc/hotswaprc is the global configuration file for the hotswap utility.
It allows system administrators to specify arbitrary shell scripts to be run after a device is inserted, as well as before and after it is
removed. Scripts are selected according to the model name retrieved from the device. This is particularly helpful for automatic configura-
tion of CD-RW drives, which require SCSI emulation and bypass normal access via the IDE subsystem.
hotswaprc is implemented as an Extensible Mark-up Language (XML) application. XML documents are structured using elements of the form
<tag-name> content <tag-name>. A Document Type Definition (DTD) describes the possible content of each element.
Please refer to the XML specification for more information. The hotswap distribution also contains an example file, doc/hotswaprc.example,
which includes the DTD for the configuration file format.
ELEMENTS
<hotswap>
This is the root element of the document. Each valid hotswaprc must contain exactly one <hotswap> element. The <hotswap> element may
contain an arbitrary number of <device> elements.
<device>
The configuration file contains one <device> element for every device for which scripts are defined. The <device> element is com-
posed of the following elements in this order: <name>, <post-insert>, <pre-remove>, <post-remove>. All but <name> are optional.
<name> The content of this element is the model identification string of the IDE device the current <device> element refers to.
<post-insert>
Contains the shell script that is to be executed after the device has been inserted and registered with the kernel.
<pre-remove>
Contains the shell script that is to be run before hotswap attempts to unregister the device.
<post-remove>
Contains the shell script that is to be run after the device had been unregistered.
REPORT BUGS
Report bugs to t.stadelmann1@physics.ox.ac.uk.
AUTHOR
Written by Tim Stadelmann.
SEE ALSO
hotswap(1), xhotswap(1).
COPYRIGHT
Copyright (c) 2002-2003 Tim Stadelmann.
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License (GPL), Version 2 or
any later version published by the Free Software Foundation.
26th November 2002 HOTSWAPRC(5)