11-05-2009
Hi,
I just found out that the code that you suggested also will print out the content of seq_81,seq_800,etc
Do you have any idea just only specific and only print out the content that matched with seq_8?
Thanks a lot ^^
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Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
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My input file:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG
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3. Shell Programming and Scripting
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
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4. Shell Programming and Scripting
Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
Below is the code that I just try but it is failed to get my desired output:
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Input file:
>position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344
MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA
ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA
NRTS*
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Input file 1:
>pattern_5
GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF
ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT
SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW
>pattern_1
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HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
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HS04636 PROGRAM type 836 1017 + Parent=g1.t1
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21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11;
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data.txt has several information like the below..
<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
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LEARN ABOUT DEBIAN
dublincore::element
DublinCore::Element(3pm) User Contributed Perl Documentation DublinCore::Element(3pm)
NAME
DublinCore::Element - Class for representing a Dublin Core element
SYNOPSIS
my $element = DublinCore::Element->new( \%info );
print "content: ", $element->content(), "
";
print "qualifier: ", $element->qualifier(), "
";
print "language: ", $element->language(), "
";
print "scheme: ", $element->scheme(), "
";
DESCRIPTION
DublinCore::Record methods such as element(), elements(), title(), etc return DublinCore::Element objects as their result. These can be
queried further to extract an elements content, qualifier, language, and schema. For a definition of these attributes please see RFC 2731
and <http://www.dublincore.org>.
METHODS
new()
The constructor. Take a hashref of input arguments.
content()
Gets and sets the content of the element.
## extract the element
my $title = $record->element( 'title' );
print $title->content();
## or you can chain them together
print $record->element( 'title' )->content();
qualifier()
Gets and sets the qualifier used by the element.
language()
Gets and sets the language of the content in element.
scheme()
Gets and sets the scheme used by the element.
name()
Gets and sets the element name (title, creator, date, etc).
is_empty()
Gets and sets the "empty" status of an element. This is useful when using DublinCore::Record's element() method.
To see if the record has an creator elements:
if( $record->element( 'creator' )->is_empty ) {
# no creators
}
set()
This function overrides the default set() behavior in order to remove the is_empty flag.
SEE ALSO
* DublinCore::Record
AUTHOR
* Ed Summers <ehs@pobox.com>
* Brian Cassidy <bricas@cpan.org>
COPYRIGHT AND LICENSE
Copyright 2007 by Ed Summers, Brian Cassidy
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.8.8 2007-11-24 DublinCore::Element(3pm)