I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
Result expected is : Pattern1 ... (7 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
tried using awk but double quotes not preserving for every field. any help to solve this is much... (5 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT OSX
trim
textutil::trim(n) Text and string utilities, macro processing textutil::trim(n)
__________________________________________________________________________________________________________________________________________________NAME
textutil::trim - Procedures to trim strings
SYNOPSIS
package require Tcl 8.2
package require textutil::trim ?0.7?
::textutil::trim::trim string ?regexp?
::textutil::trim::trimleft string ?regexp?
::textutil::trim::trimright string ?regexp?
::textutil::trim::trimPrefix string prefix
::textutil::trim::trimEmptyHeading string
_________________________________________________________________DESCRIPTION
The package textutil::trim provides commands that trim strings using arbitrary regular expressions.
The complete set of procedures is described below.
::textutil::trim::trim string ?regexp?
Remove in string any leading and trailing substring according to the regular expression regexp and return the result as a new
string. This is done for all lines in the string, that is any substring between 2 newline chars, or between the beginning of the
string and a newline, or between a newline and the end of the string, or, if the string contain no newline, between the beginning
and the end of the string. The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimleft string ?regexp?
Remove in string any leading substring according to the regular expression regexp and return the result as a new string. This apply
on any line in the string, that is any substring between 2 newline chars, or between the beginning of the string and a newline, or
between a newline and the end of the string, or, if the string contain no newline, between the beginning and the end of the string.
The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimright string ?regexp?
Remove in string any trailing substring according to the regular expression regexp and return the result as a new string. This apply
on any line in the string, that is any substring between 2 newline chars, or between the beginning of the string and a newline, or
between a newline and the end of the string, or, if the string contain no newline, between the beginning and the end of the string.
The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimPrefix string prefix
Removes the prefix from the beginning of string and returns the result. The string is left unchanged if it doesn't have prefix at
its beginning.
::textutil::trim::trimEmptyHeading string
Looks for empty lines (including lines consisting of only whitespace) at the beginning of the string and removes it. The modified
string is returned as the result of the command.
BUGS, IDEAS, FEEDBACK
This document, and the package it describes, will undoubtedly contain bugs and other problems. Please report such in the category textutil
of the Tcllib SF Trackers [http://sourceforge.net/tracker/?group_id=12883]. Please also report any ideas for enhancements you may have for
either package and/or documentation.
SEE ALSO
regexp(n), split(n), string(n)
KEYWORDS
prefix, regular expression, string, trimming
CATEGORY
Text processing
textutil 0.7 textutil::trim(n)