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Shell Programming and Scripting
Parse a string in XML file using shell script
Post 302145781 by matrixmadhan on Thursday 15th of November 2007 06:03:22 AM
11-15-2007
I checked it again and its working as expected.
May be the input format that we had used might be slightly different, or some bug in the script ?
Could you please post the input file that you had used ( the one with 2 records ) ?
I could take a look again.
May be the input format that we had used might be slightly different, or some bug in the script ?
Could you please post the input file that you had used ( the one with 2 records ) ?
I could take a look again.
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LEARN ABOUT DEBIAN
bp_gccalc
BP_GCCALC(1p) User Contributed Perl Documentation BP_GCCALC(1p) NAME
gccalc - GC content of nucleotide sequences SYNOPSIS
gccalc [-f/--format FORMAT] [-h/--help] filename or gccalc [-f/--format FORMAT] < filename or gccalc [-f/--format FORMAT] -i filename DESCRIPTION
This scripts prints out the GC content for every nucleotide sequence from the input file. OPTIONS
The default sequence format is fasta. The sequence input can be provided using any of the three methods: unnamed argument gccalc filename named argument gccalc -i filename standard input gccalc < filename FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org HISTORY
Based on script code (see bottom) submitted by cckim@stanford.edu Submitted as part of bioperl script project 2001/08/06 perl v5.14.2 2012-03-02 BP_GCCALC(1p)