g03 problems on rocks 5.3 with sge queue.


 
Thread Tools Search this Thread
Top Forums UNIX for Dummies Questions & Answers g03 problems on rocks 5.3 with sge queue.
# 1  
Old 02-02-2010
g03 problems on rocks 5.3 with sge queue.

Dear all,

I'm a new guy doing some quntum calculation with gaussian on my rocks clusters. Recently, my cluster upgraded to rocks 5.3, but something strange happened. Everything goes correct except a serious problem. when I summit my gaussian job with script to sge queue, the job does run, but with the following error message:
Code:
liuzhencc  /opt/gridengine/default/spool/compute-0-10/job_scripts/12: line 19: g03: command not found

However, the command "g03 gaussian.gjf" runs both on front node and all the computing nodes.

Actually, I reinstalled my cluster, but the problem still there.


Anyone could give some suggestions? Thanks!

PS: Before this upgration, everything goes correct.

Last edited by vbe; 02-03-2010 at 05:15 AM.. Reason: rm bad tags, added code tags
 
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Submit a qsub script SGE

Hello, I'm working on a SGE cluster and trying to echo the variables passed to the qsub command. My script is as follows #!/bin/bash #$ -V #$ -cwd #$ -pe make 10 if ; then echo "Variable is not set" else echo "Variable says: $StatedUserName" fi and I run the... (1 Reply)
Discussion started by: nans
1 Replies

2. Shell Programming and Scripting

SGE submit script

Hi, I'm trying to edit my working bash script to an SGE script in order to submit it as a job to the cluster. Currently I have: #!/bin/bash # Perform fastqc on files in a specified directory. for ((j=1; j <=17; j++)) do directory=/data4/una/batch"$j"/ ... (0 Replies)
Discussion started by: una1992
0 Replies

3. UNIX and Linux Applications

Looking to reduce the number a cpus available for SGE

Hey all Im looking to reduce the number of cpus available on a certain node in our cluster available for jobs using SGE. i.e. we have one node that has 24 cpus available for jobs on SGE, i would like to reduce that to 16. Thanks (1 Reply)
Discussion started by: olifu02
1 Replies

4. AIX

Print queue problems

I am using AIX 5. Just swapped over an HP printer. The old printer was on a JetDirect box. The new printer connects directly to the network. Using the same IP address to print to, so the only alteration I made was to edit the etc/qconfig file to alter the port setting from 9103 to 9100. I can... (2 Replies)
Discussion started by: charding
2 Replies

5. Shell Programming and Scripting

Request for help with SGE submission script manipulation

Hi, I have the following SGE submission (HPC calculation) script, which is just a Bash script: #!/bin/bash -l #$ -S /bin/bash #$ -l h_rt=1:00:0 #$ -l mem=4G #$ -N XXX #$ -pe qlc 24 #$ -P XXX #$ -wd /home/uccaxxx/Scratch/222PdT/3vac/c0001/ mpirun -m $TMPDIR/machines -np $NSLOTS... (2 Replies)
Discussion started by: crunchgargoyle
2 Replies

6. High Performance Computing

HPL on Rocks 5.3

Hey I am new to cluster benchmarking wondering if there was any guide available that I missed in my google searchs for HPL. (0 Replies)
Discussion started by: futamill
0 Replies

7. AIX

Queue problems

Hi, We have a problem with remote printers installed on our server. Consistently, the printer status is ready but the impressions of the queue are waiting therefore blocked. To unblock the situation, we must launch stopsrc qdaemon-s-s and startsrc qdaemon to reactivate the queue. Thank you... (2 Replies)
Discussion started by: GBAGO
2 Replies

8. SCO

Sco openserver 5 print queue problems

Hwey I manage a Unix box where I ama having multiple printer problems. the only way to get printers to print again is by rebooting. I stop and start services with no luck. Any one have any ideas? It can go weeks with being OK but then any given printer can go and cause the entire print queue to... (6 Replies)
Discussion started by: uk2us88
6 Replies

9. Programming

IPC - queue problems

Hi, I´m having a lot of problems when working with message queues, both on HP-UX Systems and Sun Solaris. When we fill a queue with a messages, the system hangs and locks everything that relies on the use of IPC resources. Anyone knows how to eliminate this problem? Thanks, Haroldo Teixeira (2 Replies)
Discussion started by: haroldo
2 Replies

10. UNIX for Dummies Questions & Answers

Print Queue Problems

Hi All Does anyone know what is meant by PRINTER STATUS CONNECT concerning print queues? At work we run a Perle/Connectix JetStream 8500 (RJ45 Model) to connect our dot matrix printers and often we get the Connect Status. Nobody I speak to knows what the status means. When the printer... (0 Replies)
Discussion started by: nickbungus
0 Replies
Login or Register to Ask a Question
ganeti-cleaner(8)						   Version 2.5.2						 ganeti-cleaner(8)

Name
       ganeti-cleaner - Ganeti job queue cleaner

Synopsis
       ganeti-cleaner

DESCRIPTION
The ganeti-cleaner is a periodically run script to clean old job files from the job queue archive and to remove expired X509 certificates and keys. ganeti-cleaner automatically removes all files older than 21 days from /var/lib/ganeti/queue/archive and all expired certificates and keys from /var/run/ganeti/crypto. REPORTING BUGS
Report bugs to project website (http://code.google.com/p/ganeti/) or contact the developers using the Ganeti mailing list (ganeti@google- groups.com). SEE ALSO
Ganeti overview and specifications: ganeti(7) (general overview), ganeti-os-interface(7) (guest OS definitions). Ganeti commands: gnt-cluster(8) (cluster-wide commands), gnt-job(8) (job-related commands), gnt-node(8) (node-related commands), gnt- instance(8) (instance commands), gnt-os(8) (guest OS commands), gnt-group(8) (node group commands), gnt-backup(8) (instance import/export commands), gnt-debug(8) (debug commands). Ganeti daemons: ganeti-watcher(8) (automatic instance restarter), ganeti-cleaner(8) (job queue cleaner), ganeti-noded(8) (node daemon), ganeti-masterd(8) (master daemon), ganeti-rapi(8) (remote API daemon). Ganeti htools: htools(1) (generic binary), hbal(1) (cluster balancer), hspace(1) (capacity calculation), hail(1) (IAllocator plugin), hscan(1) (data gatherer from remote clusters). COPYRIGHT
Copyright (C) 2006, 2007, 2008, 2009, 2010, 2011 Google Inc. Permission is granted to copy, distribute and/or modify under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. Ganeti ganeti-cleaner(8)