motif

TFBS::PatternGen::Gibbs::Motif(3pm)			User Contributed Perl Documentation		       TFBS::PatternGen::Gibbs::Motif(3pm)

NAME

       TFBS::PatternGen::Gibbs::Motif - class for unprocessed motifs and associated numerical scores created by the Gibbs program

SYNOPSIS

DESCRIPTION

       TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed motifs and associated numerical scores created by the Gibbs
       program. You do not normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. They are created by running TFBS::PatternGen::Gibbs

FEEDBACK

       Please send bug reports and other comments to the author.

AUTHOR - Boris Lenhard and Wynand Alkema
       Boris Lenhard <Boris.Lenhard@cgb.ki.se> Wynand Alkema <Wynand.Alkema@cgb.ki.se>

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore.

   MAP
	Title	: MAP
	Usage	: my $map_score = $motif->MAP;
	Function: returns MAP score for the detected motif
		  (This is a backward compatibility method. For consistency,
		   you should use $motif->tag('MAP_score') instead
	Returns : float (a scalar)
	Args	: none

   Other methods
       TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which inherits from TFBS::Matrix. Please consult the documentation of
       those modules for additional available methods.

perl v5.14.2							    2008-01-24				       TFBS::PatternGen::Gibbs::Motif(3pm)