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Old 10-27-2009
steadyonabix steadyonabix is offline
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Join Date: Oct 2009
Location: UK
Posts: 188
Regexpr expertise required

Any experts on regular expressions out there, can you help me rationalise this?

In this post: -

Writing an algorithm to recode data points

I use the code: -


Code:
tmp = $1 ; gsub(/00/, ".") ; $1 = tmp
        tmp = $1 ; gsub(/A[CGT]|C[GT]|GT/, "0") ; $1 = tmp
        tmp = $1 ; gsub(/AA/, "-1") ; $1 = tmp
        tmp = $1 ; gsub(/TT/, "1") ; $1 = tmp

This is because the gsub's work on the entire record but I want to exclude $1. Can anyone tell me the elegant way to do this just using the regular expression to exclude $1?

Thanks

Last edited by steadyonabix; 10-27-2009 at 01:54 PM..
 

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