Node selection with bsub


 
Thread Tools Search this Thread
Top Forums Shell Programming and Scripting Node selection with bsub
# 1  
Old 08-03-2011
Node selection with bsub

Hi!

I am currently using the bsub command to submit jobs to a cluster and I need to specify the name of the node to which i want the job sent. What do I add to my .pbs script to specify this?

Cheers
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Bsub job does not execute the script

Hello, When I'm trying to send bsub job using script that executes fine in command line, I get nothing. I do this for testing purposes, and the script scr_test is just one line: pwd > outfile So when I'm executing it in command line: $ ./scr_test it works fine producing the outfile with... (2 Replies)
Discussion started by: Sergey Aliev
2 Replies

2. Shell Programming and Scripting

How to create a variable without multiple concats in a perl scripts that makes a bsub?

The red text at the bottom represents the three lines I want to address. I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion... (3 Replies)
Discussion started by: jdilts
3 Replies

3. UNIX for Dummies Questions & Answers

Bsub command

Hi everyone, I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me? (2 Replies)
Discussion started by: Max_W
2 Replies

4. HP-UX

Mount FIle systems from node-1 onto node-2

Hi, We have HP UX service guard cluster on OS 11.23. Recently 40+ LUNs presented to both nodes by SAN team but I was asked to mount them on only one node. I created required VGs/LVs, created VxFS and mounted all of them and they are working fine. Now client requested those FS on 2nd node as... (4 Replies)
Discussion started by: prvnrk
4 Replies

5. UNIX for Dummies Questions & Answers

Bsub array problem

I'm trying to run some computations on a cluster and have found that a bsub array is what I need.. So I tried running a simple example I found bsub -J "myArray" echo "Job \$LSB_JOBINDEX" This should create 10 jobs that output "Job 1" "Job 2" .. etc. But when I run this from afs space I get... (1 Reply)
Discussion started by: ehj
1 Replies

6. Homework & Coursework Questions

Accessing one UNIX node from another node of the same server

Hi Experts, I am in need of running a script from one node say node 1 via node 2. My scheduling tool dont have access to node2 , so i need to invoke the list file from node1 but the script needs to run from node2. because the server to which i am hitting, is having access only for the node... (5 Replies)
Discussion started by: arun1377
5 Replies

7. UNIX for Dummies Questions & Answers

qsub equivalent of bsub command

"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \"" Can anybody please tell me the qsub equivalent for this command? ---------- Post updated at 06:48 AM... (0 Replies)
Discussion started by: chaudhary3031
0 Replies

8. Shell Programming and Scripting

Passing a variable to #BSUB -n in a LSF file

Hi There! I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like: set NPROC = 10 and later on call BSUB using something like: #BSUB -n $NPROC unfortunately for me, this throws an error: ... (4 Replies)
Discussion started by: lrayo
4 Replies

9. Solaris

SVM metaset on 2 node Solaris cluster storage replicated to non-clustered Solaris node

Hi, Is it possible to have a Solaris cluster of 2 nodes at SITE-A using SVM and creating metaset using say 2 LUNs (on SAN). Then replicating these 2 LUNs to remote site SITE-B via storage based replication and then using these LUNs by importing them as a metaset on a server at SITE-B which is... (0 Replies)
Discussion started by: dn2011
0 Replies

10. UNIX for Dummies Questions & Answers

Writing a script to work sequentially with bsub

Hi, I am REALLY a newbie of Unix: hope this question is not too odd. Here is my problem: I have to submit jobs to a remote platform (an IBM BCX/5120). To submit I have tobsub < filename.jcf and the .jcf file has usually the following content: #!/bin/bash #BSUB <commands of the bsub>... (1 Reply)
Discussion started by: silky
1 Replies
Login or Register to Ask a Question
condor_suspend(1)					      General Commands Manual						 condor_suspend(1)

Name
       condor_suspend suspend - jobs from the Condor queue

Synopsis
       condor_suspend [-help -version]

       condor_suspend[-debug]  [-pool  centralmanagerhostname[:portnumber]-name  scheddname][-addr  "<a.b.c.d:port>"] cluster cluster.process user
       -constraint expression-all

Description
       condor_suspendsuspends one or more jobs from the Condor job queue. If the -nameoption is specified, the named condor_scheddis targeted  for
       processing.  Otherwise,	the  local  condor_scheddis  targeted. The job(s) to be suspended are identified by one of the job identifiers, as
       described below. For any given job, only the owner of the job or one of the queue super users (defined by the  QUEUE_SUPER_USERS macro) can
       suspend the job.

Options
       -help

	  Display usage information

       -version

	  Display version information

       -pool centralmanagerhostname[:portnumber]

	  Specify a pool by giving the central manager's host name and an optional port number

       -name scheddname

	  Send the command to a machine identified by scheddname

       -addr <a.b.c.d:port>

	  Send the command to a machine located at "<a.b.c.d:port>"

       -debug

	  Causes debugging information to be sent to  stderr , based on the value of the configuration variable  TOOL_DEBUG

       cluster

	  Suspend all jobs in the specified cluster

       cluster.process

	  Suspend the specific job in the cluster

       user

	  Suspend jobs belonging to specified user

       -constraint expression

	  Suspend all jobs which match the job ClassAd expression constraint

       -all

	  Suspend all the jobs in the queue

Exit Status
       condor_suspendwill exit with a status value of 0 (zero) upon success, and it will exit with the value 1 (one) upon failure.

Examples
       To suspend all jobs except for a specific user:

       % condor_suspend  -constraint 'Owner =!= "foo"'

Author
       Condor Team, University of Wisconsin-Madison

Copyright
       Copyright  (C)  1990-2012  Condor  Team,  Computer  Sciences Department, University of Wisconsin-Madison, Madison, WI. All Rights Reserved.
       Licensed under the Apache License, Version 2.0.

       See the Condor Version 7.8.2 Manualor http://www.condorproject.org/licensefor additional notices. condor-admin@cs.wisc.edu

								  September 2012						 condor_suspend(1)