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Search: Posts Made By: Wan Fahmi
1,429
Posted By Wan Fahmi
Match and retrieve information from file
Hello

I just want to ask how to get the match of information column 2 file 1 and retrieve information from column 2 file 2. The column exon in file 1 and column color code in file 2.

File 1...
20,287
Posted By Wan Fahmi
Thanks! As you said because uniq works with sort...
Thanks! As you said because uniq works with sort and count the redundant adjacent line. So I combine both uniq and sort to get the desired output. Here is my code;

cat file |sort -k1 -u | sort...
20,287
Posted By Wan Fahmi
Uniq count second column
Hello

How can I get a number of occurrence count for this file;

ERR315389.1000156 CTTGAAGAAGAATTGAAAACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAGATATGAGGAAGAG...
1,969
Posted By Wan Fahmi
Thanks RudiC.. I will try myself first before...
Thanks RudiC.. I will try myself first before asking question.. thanks.. its work..
1,969
Posted By Wan Fahmi
Yes, by matching with the sequence,...
Yes, by matching with the sequence, CGAAGATGAACTGGACA...
1,969
Posted By Wan Fahmi
Hi RudiC, can I if the fasta file retrieve the...
Hi RudiC, can I if the fasta file retrieve the read ID from file 2 and replace it in file 1?

>trn_13 5570...
1,969
Posted By Wan Fahmi
Hi RudiC, its working now. Thank you so much!
Hi RudiC, its working now. Thank you so much!
1,969
Posted By Wan Fahmi
Match read ID file 1 from file 2
Hello everyone,

I want to get the information from which read from Column 2 (File1) (eg: Read ID: ERR315389.743357) and retrieve the information from column 2,3 and 4 from (File2). Basically file1...
2,087
Posted By Wan Fahmi
Cut the two column from non delimited file
Hi, I have a question how to cut the column from non delimited file

This is my file

gene_id ENSG00000223972 transcript_id ENST00000456328 exon_number 1 gene_biotype pseudogene gene_name DDX11L1...
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