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Search: Posts Made By: Priyanka Chopra
1,853
Posted By Priyanka Chopra
I checked regarding foreach and continue commands...
I checked regarding foreach and continue commands to retrieve all entreis but it doesnt wrk!

I didnt understand this symbol "%-28s" so unable to proceed further. Your guidance will be appreciated....
1,853
Posted By Priyanka Chopra
Hi Thanks for reply. Above command is...
Hi

Thanks for reply.

Above command is giving me only one line output rom my big input file and it's like this:


bash-3.2$ awk 'BEGIN {cnt = split ("# Drug_Target_.*_Gene_Name|# Brand_Name|#...
2,106
Posted By Priyanka Chopra
Thanks for reply. Yes I checked and tried to...
Thanks for reply.

Yes I checked and tried to do but I am not able to pick following data from input which does not include disease or approved name all other things in input which are mentioned...
2,106
Posted By Priyanka Chopra
Thanks for reply! It seems working to a...
Thanks for reply!

It seems working to a certain extent but it's not retrieving the entries without disease names and approved status which are mentioned for example in lower part of the input.
...
2,106
Posted By Priyanka Chopra
Hi I have corrected the sample output its...
Hi

I have corrected the sample output its only 6 columns overall, actually there are many drugs so I was unable to write all of those. But I have corrected sample drug output here in the same way...
2,106
Posted By Priyanka Chopra
Yes, output is not completely correct it has to...
Yes, output is not completely correct it has to be according he first row.

It should be 7 columns and second row should not contain inhibitor rather contain agonist.

sorry for that.
2,106
Posted By Priyanka Chopra
Hi Thanks for reply. @rdc 1. how...
Hi

Thanks for reply.

@rdc

1. how to get the last column (agonist/inhibitor/antagonist)?

Although I struggled with this as well. The one thing is it's mentioned before drug name and after...
2,106
Posted By Priyanka Chopra
Hi Joseph I have tried to update the...
Hi Joseph

I have tried to update the question let me know if you have any question.
2,106
Posted By Priyanka Chopra
Fetch specific entries
Hi Guys

This time my input sample from a Big file like this



In

TTDS00002 UniProt ID P11229
TTDS00002 Name Muscarinic acetylcholine receptor M1
TTDS00002 Type of target Successful...
1,853
Posted By Priyanka Chopra
Hi For my above attached sample input...
Hi

For my above attached sample input expected output is 6 columns like this:


F2 Lepirudin Refludan Approved For the treatment of heparin-induced thrombocytopenia Lepirudin...
1,853
Posted By Priyanka Chopra
Sorry I was not able to get your post#2 could you...
Sorry I was not able to get your post#2 could you please explain which one it is.

High thanks for this
1,853
Posted By Priyanka Chopra
Hi Rudi I have to fetch above mentioned bold...
Hi Rudi

I have to fetch above mentioned bold headings in my first post as columns in my expected output.
This input file is sample of my big input file which contain many drug cards
So,

My...
1,853
Posted By Priyanka Chopra
Retrieve many entries using awk
Hi all

I have a problem similar to someone else while getting output using awk and retrieving certain entries.

From the attached sample file of big file I have to retreive following headings in...
2,454
Posted By Priyanka Chopra
slight error in output while making repeations
Hi all

I am getting slight eror in my out put

My input file is

CALR Antigen processing and presentation CPSab
KIR2DL5A
KIR2DS1
KIR2DS2
KIR2DS3 ...
1,483
Posted By Priyanka Chopra
Sorry for inconvenience Don! its wrking ...
Sorry for inconvenience Don!

its wrking

I will now check with my all other files!
1,483
Posted By Priyanka Chopra
Hi Don I also have the same second file...
Hi Don


I also have the same second file with commas in first columdn just lik I was having second input fiel first time still there is no output.
1,483
Posted By Priyanka Chopra
Hi Don It's great that its working for my...
Hi Don

It's great that its working for my attached files but hwen I used twoo ther files with different data to do the same thin means to put same conditon it doesnt wrk(output s blank)

I haev...
1,483
Posted By Priyanka Chopra
Match first column entries precisely and fetch whatever in front of it
Hi all

I have 2 files:

first file

AABC
TTYP
JKBH
CVBN
NHJK
KJHM

Second file is


AABC,XCYU,JUHD Alllele1 GACXT It is approved study
TTYP,JKBH Allele2 ...
1,942
Posted By Priyanka Chopra
I doesnt wrk even on these once first file...
I doesnt wrk even on these once

first file pHAMRGKBT2D

second file Pharmgkbdrugdisease3.txt :o:confused:
1,942
Posted By Priyanka Chopra
Hi Pamu This semed to be a good code I...
Hi Pamu

This semed to be a good code I apllied to many other files and suddenly I realise it didnt wrok fo rmy many other files and my hard goes waste!

Becasuse it was matching with just first...
1,098
Posted By Priyanka Chopra
Remove whatever is mention in brackets
Hi all

My previous question was complicated let me simplify it

I have to just remove whatever is present in bracket () along with brackets

ERCC1 (PA155) Platinum compounds (PA164713176) ...
1,461
Posted By Priyanka Chopra
PRSS53 (PA165450635),VKORC1 (PA133787052) ...
PRSS53 (PA165450635),VKORC1 (PA133787052) warfarin (PA451906) Allele T is associated with increased dose of warfarin .
PRSS53 (PA165450635),VKORC1 (PA133787052) warfarin (PA451906) ...
1,461
Posted By Priyanka Chopra
Hi Kindly find attached file which describes...
Hi

Kindly find attached file which describes about comma in first column and semicolon in second column

I have tried to remove brackets but wasnt abel to remove entries and not at all done with...
1,461
Posted By Priyanka Chopra
Remove bracket part entires and separate entries after comma
Hi all


This time my input conatin 3 columns:

ERCC1 (PA155) Platinum compounds (PA164713176) Allele A is not associated with response to Platinum compounds in women with Ovarian...
1,316
Posted By Priyanka Chopra
Can anybody guide for my above question and code...
Can anybody guide for my above question and code it seems simple, But I am in need for this now!!!:o
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