bio::tools::primer::assessor::base(3pm) [debian man page]

Bio::Tools::Primer::Assessor::Base(3pm) 		User Contributed Perl Documentation		   Bio::Tools::Primer::Assessor::Base(3pm)

NAME

       Bio::Tools::Primer::Assessor::Base - base class for common assessor things

SYNOPSIS

	   use Bio::Tools::Primer::Assessor::Base

	   $base->weight(10);

DESCRIPTION

       Base class for assessors, probably only defining the weight function

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Ewan Birney
       Email birney-at-ebi.ac.uk

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

perl v5.14.2							    2012-03-02				   Bio::Tools::Primer::Assessor::Base(3pm)

Bio::Tools::Primer::Feature(3pm)			User Contributed Perl Documentation			  Bio::Tools::Primer::Feature(3pm)

NAME

       Bio::Tools::Primer::Feature - position of a single primer

SYNOPSIS

	   use Bio::Tools::Primer::Feature;

	   my $pf = Bio::Tools::Primer::Feature->new( -start => $start, -end => $end, -strand => $strand);
	   $pf->attach_seq($seq);

	   # is a SeqFeatureI

	   print "primer starts at ",$pf->start," with sequence ",$pf->seq->seq(),"
";

	   # helper functions

	   print "GC percentage ",$pf->gc(),"
";
	   print "has inversion of size 4 at ",$pf->inversion(4),"
";

DESCRIPTION

       Primer Features represents one primer in a primer pair. This object is mainly for designing primers, and probably principly used in the
       primer design system

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Ewan Birney
       Email birney-at-ebi.ac.uk

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

perl v5.14.2							    2012-03-02					  Bio::Tools::Primer::Feature(3pm)