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bio::search::statisticsi(3pm) [debian man page]

Bio::Search::StatisticsI(3pm)				User Contributed Perl Documentation			     Bio::Search::StatisticsI(3pm)

NAME
Bio::Search::StatisticsI - A Base object for statistics SYNOPSIS
# do not use this object directly, it provides the following methods # for its subclasses my $void = $obj->set_statistic("statistic_name","statistic_value"); my $value = $obj->get_statistic("statistic_name"); DESCRIPTION
This is a basic container to hold the statistics returned from a program. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Chad Matsalla Email bioinformatics1 at dieselwurks dot com APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ get_statistic Title : get_statistic Usage : $statistic_object->get_statistic($statistic_name); Function: Get the value of a statistic named $statistic_name Returns : A scalar that should be a string Args : A scalar that should be a string set_statistic Title : set_statistic Usage : $statistic_object->set_statistic($statistic_name => $statistic_value); Function: Set the value of a statistic named $statistic_name to $statistic_value Returns : Void Args : A hash containing name=>value pairs perl v5.14.2 2012-03-02 Bio::Search::StatisticsI(3pm)

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Bio::Search::HSP::hmmer3HSP(3pm)			User Contributed Perl Documentation			  Bio::Search::HSP::hmmer3HSP(3pm)

NAME
Bio::Search::HSP::hmmer3HSP - DESCRIPTION of Object SYNOPSIS
Give standard usage here DESCRIPTION
Describe the object here FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Thomas Sharpton Email thomas.sharpton@gmail.com Describe contact details here CONTRIBUTORS
Additional contributors names and emails here APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = new Bio::Search::HSP::hmmer3HSP(); Function: Builds a new Bio::Search::HSP::hmmer3HSP object Returns : an instance of Bio::Search::HSP::hmmer3HSP Args : get_aln Title : get_aln Usage : my $aln = $hsp->gel_aln Function: Returns a Bio::SimpleAlign representing the HSP alignment Returns : Bio::SimpleAlign Args : none perl v5.14.2 2012-03-02 Bio::Search::HSP::hmmer3HSP(3pm)
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