bio::mapio(3pm) [debian man page]

Bio::MapIO(3pm) 					User Contributed Perl Documentation					   Bio::MapIO(3pm)

NAME

       Bio::MapIO - A Map Factory object

SYNOPSIS

	   use Bio::MapIO;
	   my $mapio = Bio::MapIO->new(-format => "mapmaker",
				      -file   => "mapfile.map");

	   while( my $map = $mapio->next_map ) {
	       # get each map
	       foreach my $marker ( $map->each_element ) {
		   # loop through the markers associated with the map
	       }
	   }

DESCRIPTION

       This is the Factory object for reading Maps from a data stream or file.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich
       Email jason@bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::MapIO->new();
	Function: Builds a new Bio::MapIO object
	Returns : Bio::MapIO
	Args	:

   Bio::Factory::MapFactoryI methods
   next_map
	Title	: next_tree
	Usage	: my $map = $factory->next_map;
	Function: Get a map from the factory
	Returns : L<Bio::Map::MapI>
	Args	: none

   write_map
	Title	: write_tree
	Usage	: $factory->write_map($map);
	Function: Write a map out through the factory
	Returns : none
	Args	: L<Bio::Map::MapI>

   attach_EventHandler
	Title	: attach_EventHandler
	Usage	: $parser->attatch_EventHandler($handler)
	Function: Adds an event handler to listen for events
	Returns : none
	Args	: L<Bio::Event::EventHandlerI>

   _eventHandler
	Title	: _eventHandler
	Usage	: private
	Function: Get the EventHandler
	Returns : L<Bio::Event::EventHandlerI>
	Args	: none

   _load_format_module
	Title	: _load_format_module
	Usage	: *INTERNAL MapIO stuff*
	Function: Loads up (like use) a module at run time on demand
	Example :
	Returns :
	Args	:

   _guess_format
	Title	: _guess_format
	Usage	: $obj->_guess_format($filename)
	Function:
	Example :
	Returns : guessed format of filename (lower case)
	Args	:

perl v5.14.2							    2012-03-02							   Bio::MapIO(3pm)