bio::location::widestcoordpolicy(3pm) [debian man page]

Bio::Location::WidestCoordPolicy(3pm)			User Contributed Perl Documentation		     Bio::Location::WidestCoordPolicy(3pm)

NAME

       Bio::Location::WidestCoordPolicy - class implementing Bio::Location::CoordinatePolicy as the widest possible and reasonable range

SYNOPSIS

       See Bio::Location::CoordinatePolicyI

DESCRIPTION

       CoordinatePolicyI implementing objects are used by Bio::LocationI implementing objects to determine integer-valued coordinates when asked
       for it.

       This class will compute the coordinates such that always the widest possible range is returned, but by using some common sense. This means
       that e.g.  locations like "<5..100" (start before position 5) will return 5 as start (returned values have to be positive integers).

FEEDBACK

       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution.  Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Hilmar Lapp, Jason Stajich
       Email <hlapp-at-gmx-dot-net>, <jason-at-bioperl-dot-org>

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

   start
	 Title	 : start
	 Usage	 : $start = $policy->start($location);
	 Function: Get the integer-valued start coordinate of the given location as
		   computed by this computation policy.
	 Returns : A positive integer number.
	 Args	 : A Bio::LocationI implementing object.

   end
	 Title	 : end
	 Usage	 : $end = $policy->end($location);
	 Function: Get the integer-valued end coordinate of the given location as
		   computed by this computation policy.
	 Returns : A positive integer number.
	 Args	 : A Bio::LocationI implementing object.

perl v5.14.2							    2012-03-02				     Bio::Location::WidestCoordPolicy(3pm)

Check Out this Related Man Page

Bio::Ontology::RelationshipFactory(3pm) 		User Contributed Perl Documentation		   Bio::Ontology::RelationshipFactory(3pm)

NAME

       Bio::Ontology::RelationshipFactory - Instantiates a new Bio::Ontology::RelationshipI (or derived class) through a factory

SYNOPSIS

	   use Bio::Ontology::RelationshipFactory;

	   # the default type is Bio::Ontology::Relationship
	   my $factory = Bio::Ontology::RelationshipFactory->new(
					-type => 'Bio::Ontology::GOterm');
	   my $clu = $factory->create_object(-name => 'peroxisome',
					     -ontology => 'Gene Ontology',
					     -identifier => 'GO:0005777');

DESCRIPTION

       This object will build Bio::Ontology::RelationshipI objects generically.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Hilmar Lapp
       Email hlapp at gmx.net

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Ontology::RelationshipFactory->new();
	Function: Builds a new Bio::Ontology::RelationshipFactory object
	Returns : Bio::Ontology::RelationshipFactory
	Args	: -type => string, name of a Bio::Ontology::RelationshipI
			   derived class.
			   The default is Bio::Ontology::Relationship.

       See Bio::Ontology::Relationship, Bio::Ontology::RelationshipI.

perl v5.14.2							    2012-03-02				   Bio::Ontology::RelationshipFactory(3pm)

Linux and UNIX Man Pages

bio::location::widestcoordpolicy(3pm) [debian man page]

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