Linux and UNIX Man Pages

Linux & Unix Commands - Search Man Pages

bio::graphics::rendereri(3pm) [debian man page]

Bio::Graphics::RendererI(3pm)				User Contributed Perl Documentation			     Bio::Graphics::RendererI(3pm)

NAME
Bio::Graphics::RendererI - A renderer for the Bio::Graphics class that renders Bio::SeqFeature::CollectionI objects onto Bio::Graphics::Panels using configuration information provided by a Bio::Graphics::ConfiguratorI. SYNOPSIS
# Get a renderer somehow, called $renderer # create a new panel and render contents a feature collection onto it my $config = new ConfigIO( $config_file )->getConfig(); my $features = $data_provider->getCollection(); my ( $tracks_rendered, $panel ) = $renderer->render( $features, $prefs ); DESCRIPTION
Renderer of Bio::SeqFeature::CollectionIs (collections of features) onto a Bio::Graphics::Panel using a Bio::Graphics::ConfiguratorI for general and track-specific rendering options. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.open-bio.org/ AUTHOR
Paul Edlefsen <paul@systemsbiology.org>. Copyright (c) 2003 Institute for Systems Biology This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ render Title : render Usage : ( $rendered, $panel ) = $renderer->render( $collection, $configurator [, $panel ] ); Function: Renders the SeqFeatures in the given collection onto a Bio::Graphics::Panel (if no panel is given, one will be created), using the given Bio::Graphics::ConfiguratorI for general and track-specific rendering options. Returns : In a scalar context returns the number of tracks rendered. In a list context, returns a two-element list containing the number of features rendered and the panel. Args : A Bio::SeqFeature::CollectionI and a Bio::Graphics::ConfiguratorI and optionally a Bio::Graphics::Panel. Status : Public perl v5.14.2 2012-02-20 Bio::Graphics::RendererI(3pm)

Check Out this Related Man Page

Bio::Graphics::Glyph::pinsertion(3pm)			User Contributed Perl Documentation		     Bio::Graphics::Glyph::pinsertion(3pm)

NAME
Bio::Graphics::Glyph::pinsertion - The "Drosophila P-element Insertion" glyph SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>. DESCRIPTION
This glyph was designed to show P-element insertions in the Drosophila genome, but in fact is suitable for any type of zero-width feature. Also see the triangle glyph. OPTIONS In addition to the generic options, this glyph recognizes: Option Name Description Default ----------- ----------- ------- -insertion_width Width of glyph in pixels 3 BUGS
Please report them. SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD AUTHOR
Allen Day <day@cshl.org>, Shengqiang Shu <sshu@bdgp.lbl.gov> Copyright (c) 2001 Cold Spring Harbor Laboratory, BDGP This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::pinsertion(3pm)
Man Page