Bio::Graphics::Glyph::ragged_ends(3pm) User Contributed Perl Documentation Bio::Graphics::Glyph::ragged_ends(3pm)
NAME
Bio::Graphics::Glyph::ragged_ends - The "ragged ends" glyph
SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This is identical to the "box" glyph except that it will draw the subparts of features that contain subfeatures. The subparts are not
connected -- use the "segments" glyph for that. "Generic" is the default glyph used when not otherwise specified.
OPTIONS
This glyph provides two extra options to control whether the right and/or left ends of the drawn box are to be drawn "raggedly" with
zigzags instead of vertical lines.
Option Values Default
-raggedleft 0 | 1 1
-raggedright 0 | 1 1
-zig > 3 4
-zag > 3 4
The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.
Option Description Default
------ ----------- -------
-fgcolor Foreground color black
-outlinecolor Synonym for -fgcolor
-bgcolor Background color turquoise
-fillcolor Synonym for -bgcolor
-linewidth Line width 1
-height Height of glyph 10
-font Glyph font gdSmallFont
-connector Connector type 0 (false)
-connector_color
Connector color black
-pad_top Top padding 0
-pad_bottom Bottom padding 0
-label Whether to draw a label 0 (false)
-description Whether to draw a description 0 (false)
-strand_arrow Whether to indicate 0 (false)
strandedness
-hilite Highlight color undef (no color)
-pad_top and -pad_bottom allow you to insert some blank space between the glyph's boundary and its contents. This is useful if you are
changing the glyph's height dynamically based on its feature's score.
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
Bio::Graphics::Glyph::xyplot, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Aaron J Mackey <amackey@pcbi.upenn.edu>.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::ragged_ends(3pm)