ace::graphics::glyph::transcript(3pm) [debian man page]

Ace::Graphics::Glyph::transcript(3pm)			User Contributed Perl Documentation		     Ace::Graphics::Glyph::transcript(3pm)

NAME

       Ace::Graphics::Glyph::transcript - The "gene" glyph

SYNOPSIS

	 See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.

DESCRIPTION

       This glyph draws a series of filled rectangles connected by up-angled connectors or "hats".  The rectangles indicate exons; the hats are
       introns.  The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.

       The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display.  Implied introns (not
       returned by the introns() method) are drawn in a contrasting color to explicit introns.

   OPTIONS
       In addition to the common options, the following glyph-specific option is recognized:

	 Option 	       Description		      Default
	 ------ 	       -----------		      -------

	 -implied_intron_color The color to use for gaps      gray
			       not returned by the introns()
			       method.

	 -draw_arrow	       Whether to draw arrowhead      true
			       indicating direction of
			       transcription.

BUGS

       Please report them.

SEE ALSO

       Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
       Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
       Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,

AUTHOR

       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2001-05-22				     Ace::Graphics::Glyph::transcript(3pm)

Ace::Graphics::Glyph::anchored_arrow(3pm)		User Contributed Perl Documentation		 Ace::Graphics::Glyph::anchored_arrow(3pm)

NAME

       Ace::Graphics::Glyph::anchored_arrow - The "anchored_arrow" glyph

SYNOPSIS

	 See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.

DESCRIPTION

       This glyph draws an arrowhead which is anchored at one or both ends (has a vertical base) or has one or more arrowheads.  The arrowheads
       indicate that the feature does not end at the edge of the picture, but continues.  For example:

	   |-----------------------------|	    both ends in picture
	<----------------------|		    left end off picture
		|---------------------------->	    right end off picture
	<------------------------------------>	    both ends off picture

   OPTIONS
       In addition to the standard options, this glyph recognizes the following:

	 Option 	Description		   Default

	 -tick		draw a scale		   0
	 -rel_coords	use relative coordinates   false
			for scale

       The argument for b<-tick> is an integer between 0 and 2 and has the same interpretation as the b<-tick> option in
       Ace::Graphics::Glyph::arrow.

       If b<-rel_coords> is set to a true value, then the scale drawn on the glyph will be in relative (1-based) coordinates relative to the
       beginning of the glyph.

BUGS

       Please report them.

SEE ALSO

       Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
       Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
       Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,

AUTHOR

       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2001-06-04				 Ace::Graphics::Glyph::anchored_arrow(3pm)