beagle_beagleerrorcode(3) [debian man page]
beagle.BeagleErrorCode(3) HMSBEAGLE beagle.BeagleErrorCode(3) NAME
beagle.BeagleErrorCode - SYNOPSIS
Public Member Functions BeagleErrorCode (int errCode, String meaning) int getErrCode () String getMeaning () Public Attributes NO_ERROR = (0, 'no error') GENERAL_ERROR = (-1, 'general error') OUT_OF_MEMORY_ERROR = (-2, 'out of memory error') UNIDENTIFIED_EXCEPTION_ERROR = (-3, 'unidentified exception error') UNINITIALIZED_INSTANCE_ERROR = (-4, 'uninitialized instance error') OUT_OF_RANGE_ERROR = (-5, 'One of the indices specified exceeded the range of the array') NO_RESOURCE_ERROR = (-6, 'No resource matches requirements') NO_IMPLEMENTATION_ERROR = (-7, 'No implementation matches requirements') FLOATING_POINT_ERROR = (-8, 'Floating-point range exceeded') Detailed Description Author: Andrew Rambaut Alexei Drummond Version: $Id$ Author Generated automatically by Doxygen for HMSBEAGLE from the source code. Version 1.0.0 Fri May 25 2012 beagle.BeagleErrorCode(3)
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beagle::cpu::BeagleCPU4StateImpl(3) HMSBEAGLE beagle::cpu::BeagleCPU4StateImpl(3) NAME
beagle::cpu::BeagleCPU4StateImpl - SYNOPSIS
Inherits beagle::cpu::BeagleCPUImpl< BEAGLE_CPU_GENERIC >. Public Member Functions virtual const char * getName () virtual void calcStatesStates (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE *matrices2) virtual void calcStatesPartials (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) virtual void calcPartialsPartials (REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) virtual int calcRootLogLikelihoods (const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) virtual int calcRootLogLikelihoodsMulti (const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices, const int *scaleBufferIndices, int count, double *outSumLogLikelihood) virtual int calcEdgeLogLikelihoods (const int parentBufferIndex, const int childBufferIndex, const int probabilityIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) virtual void calcStatesStatesFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) virtual void calcStatesPartialsFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) virtual void calcPartialsPartialsFixedScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) virtual void calcPartialsPartialsAutoScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling) int integrateOutStatesAndScale (const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) virtual void rescalePartials (REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes) Additional Inherited Members Author Generated automatically by Doxygen for HMSBEAGLE from the source code. Version 1.0.0 Fri May 25 2012 beagle::cpu::BeagleCPU4StateImpl(3)