DOMAINRESO(1e) EMBOSS Manual for Debian DOMAINRESO(1e)
NAME
domainreso - Remove low resolution domains from a DCF file.
SYNOPSIS
domainreso -cpdbpath dirlist -dcfinfile infile -threshold float -dcfoutfile outfile
domainreso -help
DESCRIPTION
domainreso is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "PROTEIN:3D
STRUCTURE" command group(s).
OPTIONS
Input section
-cpdbpath dirlist
This option specifies the location of domain CCF file (clean coordinate files) (input). A 'clean cordinate file' contains coordinate
and other data for a single PDB file or a single domain from SCOP or CATH, in CCF format (EMBL-like). The files, generated by using
PDBPARSE (pdb files) or DOMAINER (domains), contain 'cleaned-up' data that is self-consistent and error-corrected. Records for residue
solvent accessibility and secondary structure are added to the file by using PDBPLUS. Default value: ./
-dcfinfile infile
This option specifies the name of DCF file (domain classification file) (input). A 'domain classification file' contains classification
and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE.
Domain sequence information can be added to the file by using DOMAINSEQS.
Required section
-threshold float
This option specifies the threshold for inclusion (Angstroms). Domains exceeding the threshold for inclusion (Angstroms) will not be
given in the output file. Default value: 2.8
Output section
-dcfoutfile outfile
This option specifies the name of DCF file (domain classification file) (output). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and
CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
domainreso is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.
DOMAINATRIX 0.1.0+20100721 08/11/2010 DOMAINRESO(1e)