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warptensorimagemultitransform(1) [debian man page]

WARPTENSORIMAGEMULTITRANSFORM(1)				   User Commands				  WARPTENSORIMAGEMULTITRANSFORM(1)

NAME

       WarpTensorImageMultiTransform - part of ANTS registration suite

DESCRIPTION

       WarpImageMultiTransform	ImageDimension	moving_image  output_image  [-R  reference_image  | --tightest-bounding-box] (--reslice-by-header)
       [--use-NN (use Nearest Neighbor Interpolator)][--ANTS-prefix prefix-name | --ANTS-prefix-invert	prefix-name]  {[deformation_field  |  [-i]
       affine_transform_txt | --Id | [-i] --moving-image-header / -mh  | [-i] --reference-image-header / -rh]} Example: Reslice the image: WarpIm-
       ageMultiTransform 3 Imov.nii Iout.nii --tightest-bounding-box --reslice-by-header Reslice the image to a reference  image:  WarpImageMulti-
       Transform  3  Imov.nii  Iout.nii  -R  Iref.nii --tightest-bounding-box --reslice-by-header Note: -i will use the inversion of the following
       affine transform.  --tightest-bounding-box will be overrided by -R reference_image if given. It computes the tightest  bounding	box  using
       all  the  affine transformations.  --Id uses the identity transform.  --moving-image-header or -mh in short will use the orientation header
       of the moving image file. This is typically not used with --reslice-by-header.  --reference-image-header or -rh in short will use the  ori-
       entation  header  of  the  fixed image file. This is typically not used with --reslice-by-header.  --reslice-by-header uses the orientation
       matrix and origin encoded in the image file header. It can be used together with -R. This is typically not used	together  with	any  other
       transforms. --reslice-by-header is equvalient to -i -mh, or -fh -i -mh if used together with -R.

       For ANTS users: To use with the deformation field and the affine transform files generated from ANTS: --ANTS-prefix prefix-name --ANTS-pre-
       fix-invert prefix-name Example: 3 moving_image output_image -R reference_image --ANTS-prefix abcd.nii.gz Applies  abcdWarpxvec.nii.gz/abcd-
       Warpyvec.nii.gz/abcdWarpzvec.nii.gz  and  then  abcdAffine.txt.	Use this with ANTS to get the moving_image warped into the reference_image
       domain.	 3  reference_image  output_image  -R  moving_image  --ANTS-prefix-invert  abcd.nii.gz	--ANTS-invert  Applies	the  inversion	of
       abcdAffine.txt  and  then  abcdInverseWarpxvec.nii.gz/abcdInverseWarpyvec.nii.gz/abcdInverseWarpzvec.nii.gz.  Use this with ANTS to get the
       reference_image warped into the moving_image domain.  Note: prefix name "abcd" without any extension will use ".nii.gz" by default

WarpTensorImageMultiTransform 1.9				     May 2012					  WARPTENSORIMAGEMULTITRANSFORM(1)

Check Out this Related Man Page

pnmmontage(1)						      General Commands Manual						     pnmmontage(1)

NAME

       pnmmontage - create a montage of portable anymaps

SYNOPSIS

       pnmmontage [-?|-help] [-header=headerfile] [-quality=n] [-prefix=prefix] [-0|-1|-2|...|-9] pnmfile...

DESCRIPTION

       Packs  images of differing sizes into a minimum-area composite image, optionally producing a C header file with the locations of the subim-
       ages within the composite image.

OPTIONS

       -?, -help
	      Displays a (very) short usage message.

       -header
	      Tells pnmmontage to write a C header file of the locations of the original images within the packed image.  Each original image gen-
	      erates  four  #defines  within  the packed file: xxxX, xxxY, xxxSZX, and xxxSZY, where xxx is the name of the file, converted to all
	      uppercase.  The #defines OVERALLX and OVERALLY are also produced, specifying the total size of the montage image.

       -prefix
	      Tells pnmmontage to use the specified prefix on all of the #defines it generates.

       -quality
	      Before attempting to place the subimages, pnmmontage will calculate a minimum possible area for the  montage;  this  is  either  the
	      total  of the areas of all the subimages, or the width of the widest subimage times the height of the tallest subimage, whichever is
	      greater.	pnmmontage then initiates a problem-space search to find the best packing; if it finds a solution that is  (at	least)	as
	      good  as the minimum area times the quality as a percent, it will break out of the search.  Thus, -q 100 will find the best possible
	      solution; however, it may take a very long time to do so.  The default is -q 200.

       -0, -1, ... -9
	      These options control the quality at a higher level than -q; -0 is the worst quality (literally  pick  the  first  solution  found),
	      while  -9 is the best quality (perform an exhaustive search of problem space for the absolute best packing).  The higher the number,
	      the slower the computation.  The default is -5.

NOTES

       Using -9 is excessively slow on all but the smallest image sets.  If the anymaps differ in maxvals, then pnmmontage will pick the  smallest
       maxval which is evenly divisible by each of the maxvals of the original images.

SEE ALSO

       pnmcat(1), pnmindex(1), pnm(5), pam(5), pbm(5), pgm(5), ppm(5)

AUTHOR

       Copyright (C) 2000 by Ben Olmstead.

								 31 December 2000						     pnmmontage(1)
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