teem-tend(1) [debian man page]

teem-tend(1)							   User Commands						      teem-tend(1)

NAME

       teem-tend - Diffusion Image Processing and Analysis

DESCRIPTION

	      "tend" is a command-line interface to much of the functionality in "ten",

	      a C library for diffusion image processing. Ten is one library in the "Teem" collection of libraries. More information about Teem is
	      at <http://teem.sourceforge.net>.

	      Users are strongly encouraged to join the teem-users mailing list:

	      <http://lists.sourceforge.net/lists/listinfo/teem-users>. This is the primary forum for feedback, questions, and feature requests.

	      Like "unu", another Teem command-line binary, it is often useful to chain

	      together invocations of tend with pipes, as in the following, which estimates tensors from DWIs, takes a slice of the tensor volume,
	      computes the standard RGB colormap of the principal eigenvector, and then quantizes it to an 8-bit PNG:

	      tend estim -i dwi.nhdr -B kvp -knownB0 true 

	      | tend slice -a 2 -p 30  | tend evecrgb -c 0 -a cl2 -gam 1.2  | unu quantize -b 8 -min 0 -max 1 -o z30-rgb.png

	      If tend repeatedly proves itself useful for your research, an

	      acknowledgment  to  that effect in your publication would be greatly appreciated, such as (for LaTeX): "Dataset processing performed
	      with the {	t tend} tool part of the {	t Teem} toolkit available at {	t $<$http://teem.sf.net$>$}"

SEE ALSO

       The full documentation for Teem is maintained as a Texinfo manual.  If the info and teem-tend programs are properly installed at your site,
       the command

	      info teem-tend

       should give you access to the complete manual.

1.10.0								 December 10, 2008						      teem-tend(1)

TEEM(1) 							   User Commands							   TEEM(1)

NAME

       teem-overrgb - Composites an RGBA nrrd over a background color.

SYNOPSIS

       teem-overrgb -i <nin> [-c <contrast>] [-cfp <fixed point>] fR

DESCRIPTION

       ./teem-overrgb: Composites an RGBA nrrd over a background color (or image), after doing gamma correction, then quantizes to an 8-bit image.
       Actually, the input nrrd can have more than 4 values per pixel, but only the first four are used. If the RGBA nrrd is floating  point,  the
       values  are  taken at face value; if it is fixed point, the values interpreted as having been quantized (so that 8-bit RGBA images will act
       as you expect). When compositing with a background image, the given background image does not have to be the same size as the input  image;
       it will be resampled (with linear interpolation) to fit.

	      [-g <gamma>] [-b <background>] [-bi <nbg>] -o <filename>

       -i <nin> = input nrrd to composite (nrrd)

       -c <contrast> = contrast to apply to RGB values, before gamma. "0.0"
	      means no change, "1.0" means thresholding, "-1.0" means a complete washout. (double); default: "0.0"

       -cfp <fixed point> = component level that doesn't change with contrast

	      (double); default: "0.5"

       -g <gamma> = gamma to apply to image data, after contrast (double);
	      default: "1.0"

       -b <background> = background color to composite against; white is 1 1 1,
	      not 255 255 255. (3 doubles); default: "0 0 0"

       -bi <nbg> = 8-bit RGB background image to composite against (nrrd);
	      default: ""

       -o <filename> = file to write output PPM image to (string)

SEE ALSO

       The full documentation for teem-overrgb is maintained as a Texinfo manual.  If the info and teem-overrgb programs are properly installed at
       your site, the command

	      info teem-overrgb

       should give you access to the complete manual.

1.10.0								 December 10, 2008							   TEEM(1)