sfood-graph(1) [debian man page]

SFOOD-GRAPH(1)						      General Commands Manual						    SFOOD-GRAPH(1)

NAME

       sfood-graph - read snakefood dependencies from stdin and output a visual graph.

SYNOPSIS

       sfood-graph [options]

DESCRIPTION

       Read snakefood dependencies from stdin and output a visual graph.

OPTIONS

       -h, --help
	      show the help message and exit

       -f, --full-pathnames, --full
	      Output the full pathnames, not just the relative.

       -p, --pythonify-filenames, --remove-extensions
	      Remove filename extensions in the graph and replace slashes with dots.

       -r, --redundant
	      Do not eliminate redundant dependencies.

SEE ALSO

       sfood(1), sfood-checker(1), sfood-cluster(1), sfood-copy(1), sfood-flatten(1), sfood-imports(1).

AUTHOR

       sfood-graph was written by Martin Blais <blais@furius.ca> and it's part of snakefood suite.

       This manual page was written by Sandro Tosi <morph@debian.org>, for the Debian project (and may be used by others).

								  January 2, 2009						    SFOOD-GRAPH(1)

PYEVOLVE-GRAPH(1)						  PYEVOLVE-GRAPH						 PYEVOLVE-GRAPH(1)

NAME

       pyevolve-graph - graphical plotting tool for Pyevolve

SYNOPSIS

       pyevolve-graph [options]

DESCRIPTION

       This  manual  page documents briefly the pyevolve-graph command, a graphical plotting tool for programs based on Pyevolve. To use this pro-
       gram, you must have python-matplotlib and python-sqlite installed.

GENERAL OPTIONS

       Pyevolve-pygraph supports the following options:

       -h, --help
	      show a brief summary of available options and exit

       -f FILENAME, --file=FILENAME
	      Database file to read from. default is ./pyevolve.db.

       -i IDENTIFY, --identify=IDENTIFY
	      The identify of evolution.

       -o OUTFILE, --outfile=OUTFILE
	      Write the graph image to a file. Don't specify an extension, just the filename.  The file will be written in PNG format by  default,
	      but this can be changed using the --extension or -e options.

       -e EXTENSION, --extension=EXTENSION
	      Graph  image file format. Supported options (formats) are all those supported by python-matplotlib. Currently, these should be: EMF,
	      EPS, PDF, PNG, PS, RAW, RGBA, SVG, SVGZ. Default is PNG.

       -g GENRANGE, --genrange=GENRANGE
	      This is the generation range of the graph. For example, 1:30 would denote an interval between 1 and 30.

       -c COLORMAP, --colormap=COLORMAP
	      Sets the Color Map for the graph types -8 and -9. Some options are: summer, bone, gray, hot, jet, cooper, spectral. The  default	is
	      jet.

       -m,--minimize
	      Sets the 'Minimize' mode. Default is the Maximize mode. This option makes sense if you are minimizing your evaluation function.

       -0     Write all standard graphs to file. Equivalent to specifying -1 -2 -3 -4 -5.

       -1     Error bars graph (raw scores).

       -2     Error bars graph (fitness scores).

       -3     Max/min/avg/std. dev. graph (raw scores).

       -4     Max/min/avg graph (fitness scores).

       -5     Raw and Fitness min/max difference graph.

       -6     Compare  best raw score of two or more evolutions. You must specify the identify as a comma-separated list with the --identify or -i
	      options.	The maximum is 6 items.

       -7     Compare best fitness score of two or more evolutions. You must specify the identify as a comma-separated list with the --identify or
	      -i options. The maximum is 6 items.

       -8     Show a heat map of population raw score distribution between generations.

       -9     Show a heat map of population fitness score distribution between generations.

EXAMPLES

       The following are some examples on how to use pyevolve-graph:

       1. Output a graph for identify 'ex1' in PNG format (default) to file 'graph_ex1.png':

		   pyevolve-graph -i ex1 -1 -o graph_ex1

       2. Output a graph for identify 'ex1' to the PDF file 'graph_ex1.pdf':

		   pyevolve-graph -i ex1 -1 -o graph_ex1 -e pdf

       3. This command will plot the evolution of the generations between 10 and 20:

		   pyevolve-graph -i ex1 -1 -g 10:20

       4. Use -m to indicate that you have minimized the evaulation function:

		   pyevolve_graph.py -i ex1 -1 -m

       5. Specify an identify list for the comparison output options -6 and -7:

		   pyevolve_graph.py -i ex1_run1,ex1_run2,ex1_run3 -6

       Fore more examples on how to use pyevolve-graph, including sample images, users are recommended to install the python-pyevolve-doc package.

SEE ALSO

       /usr/share/doc/python-pyevolve/examples
	      Contains many examples.

AUTHOR

       pyevolve-graph was written by Christian S. Perone <christian.perone@gmail.com>.

       This manual page was written by Christian Kastner <debian@kvr.at> for the Debian project (and may be used by others).

pyevolve_graph							    2010-05-10							 PYEVOLVE-GRAPH(1)