figtree(1) [debian man page]

FIGTREE(1)							   User Commands							FIGTREE(1)

NAME

       figtree - graphical phylogenetic tree viewer

DESCRIPTION

       Figtree is a (phylogenetic) tree figure drawing tool.  It is designed as a graphical viewer of phylogenetic trees and as a program for pro-
       ducing publication-ready figures.  In particular it is designed to display summarized and annotated trees produced by BEAST.

AUTHOR

       Andrew Rambaut

       Institute of Evolutionary Biology

       University of Edinburgh

       a.rambaut@ed.ac.uk

       http://tree.bio.ed.ac.uk/

	      Uses the Java Evolutionary Biology Library (JEBL)

	      http://jebl.sourceforge.net/

	      Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey,

	      Tulio de Oliveira, Beth Shapiro & Marc Suchard

	      Usage: figtree [-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [-width <i>] [-height <i>] [-help] [<tree-file-name>] [<graphic-file-name>]

       -graphic produce a graphic with the given format

       -width the width of the graphic in pixels

       -height the height of the graphic in pixels

       -help option to print this message

	      Example: figtree test.tree Example: figtree -graphic PDF test.tree test.pdf Example: figtree -graphic GIF  -width  320  -height  320
	      test.tree test.gif

       Unrecognized argument: --version

	      FigTree v1.3.1, 2006-2009

	      Tree Figure Drawing Tool

	      Andrew Rambaut

	      Institute of Evolutionary Biology

	      University of Edinburgh

	      a.rambaut@ed.ac.uk

	      http://tree.bio.ed.ac.uk/

	      Uses the Java Evolutionary Biology Library (JEBL)

	      http://jebl.sourceforge.net/

	      Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey,

	      Tulio de Oliveira, Beth Shapiro & Marc Suchard

	      Usage: figtree [-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [-width <i>] [-height <i>] [-help] [<tree-file-name>] [<graphic-file-name>]

       -graphic produce a graphic with the given format

       -width the width of the graphic in pixels

       -height the height of the graphic in pixels

       -help option to print this message

	      Example:	figtree  test.tree  Example:  figtree -graphic PDF test.tree test.pdf Example: figtree -graphic GIF -width 320 -height 320
	      test.tree test.gif

SEE ALSO

       The full documentation for figtree is maintained as a Texinfo manual.  If the info and figtree programs	are  properly  installed  at  your
       site, the command

	      info figtree

       should give you access to the complete manual.

figtree 							   February 2011							FIGTREE(1)

Check Out this Related Man Page

CAM::PDF::GS(3pm)					User Contributed Perl Documentation					 CAM::PDF::GS(3pm)

NAME

       CAM::PDF::GS - PDF graphic state

LICENSE

       See CAM::PDF.

SYNOPSIS

	   use CAM::PDF;
	   my $pdf = CAM::PDF->new($filename);
	   my $contentTree = $pdf->getPageContentTree(4);
	   my $gs = $contentTree->computeGS();

DESCRIPTION

       This class is used to represent the graphic state at a point in the rendering flow of a PDF page.  Much of the functionality is actually
       based in the parent class, CAM::PDF::GS::NoText.

       Subclasses that want to do something useful with text should override the renderText() method.

CONVERSION FUNCTIONS

       $self->getCoords($node)
	   Computes device coordinates for the specified node.	This implementation handles text-printing nodes, and hands all other types to the
	   superclass.

       $self->textToUser($x, $y)
	   Convert text coordinates ("Tm") to user coordinates.  Returns the converted X and Y.

       $self->textToDevice($x, $y)
	   Convert text coordinates ("Tm") to device coordinates.  Returns the converted X and Y.

       $self->textLineToUser($x, $y)
	   Convert text coordinates ("Tlm") to user coordinates.  Returns the converted X and Y.

       $self->textLineToDevice($x, $y)
	   Convert text coordinates ("Tlm") to device coordinates.  Returns the converted X and Y.

       $self->renderText($string, $width)
	   A general method for rendering strings, from "Tj" or "TJ".  This is a no-op, but subclasses may override.

       $self->Tadvance($width)
	   Move the text cursor.

DATA FUNCTIONS

       $self->BT()
       $self->Tf($fontname, $fontsize)
       $self->Tstar()
       $self->Tz($scale)
       $self->Td($x, $y)
       $self->TD($x, $y)
       $self->Tj($string)
       $self->TJ($arrayref)
       $self->quote($string)
       $self->doublequote($tw, $tc, $string)
       $self->Tm($m1, $m2, $m3, $m4, $m5, $m6)

AUTHOR

       See CAM::PDF

perl v5.14.2							    2012-07-08							 CAM::PDF::GS(3pm)

Linux and UNIX Man Pages

figtree(1) [debian man page]

Check Out this Related Man Page