cmtk-xform2dfield(1) [debian man page]

xform2dfield(1) 				       The Computational Morphometry Toolkit					   xform2dfield(1)

NAME

       xform2dfield - Transformation to Deformation Field

SYNOPSIS

       xform2dfield OutputPath ReferenceImage XformList

DESCRIPTION

       Convert parametric rigid or nonrigid transformation to deformation field, sampled at pixel locations of a given reference image

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --mask, -m
	    Use reference image pixels as a binary mask.

       --inversion-tolerance-factor <double>
	    Factor for numerical tolerance of B-spline inversion [multiples of minimum grid pixel size; default=0.1] [Default: 0.1]

       --downsample <string>
	    Downsample grid by factors 'x,y,z' or by single factor 'xyz' [Default: NONE]

       --output-absolute
	    Make output deformation field with absolute target location vectors, rather than relative offset vectors.

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						   xform2dfield(1)

streamxform(1)					       The Computational Morphometry Toolkit					    streamxform(1)

NAME

       streamxform - Apply coordinate transformation to point coordinates from text stream.

SYNOPSIS

       streamxform XformList

DESCRIPTION

       An  ASCII-format  list  of  point  coordinates is read from standard input and a user-provided sequence of coordinate transformations (each
       optionally inverted) is applied to them. The transformed points are then written to standard output.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --inversion-tolerance <double>
	    Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more accurate inversion, but may increase  failure  rate.
	    [Default: 1e-08]

       --source-image <string>
	    Set source image of the transformation (i.e., the image that the transformation maps points FROM) to correct for differences in orien-
	    tation and coordinate space.  [Default: NONE]

       --target-image <string>
	    Set target image of the transformation (i.e., the image that the transformation maps points TO) to correct for differences in orienta-
	    tion and coordinate space.	[Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						    streamxform(1)