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cmtk-xform2dfield(1) [debian man page]

xform2dfield(1) 				       The Computational Morphometry Toolkit					   xform2dfield(1)

NAME

       xform2dfield - Transformation to Deformation Field

SYNOPSIS

       xform2dfield OutputPath ReferenceImage XformList

DESCRIPTION

       Convert parametric rigid or nonrigid transformation to deformation field, sampled at pixel locations of a given reference image

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --mask, -m
	    Use reference image pixels as a binary mask.

       --inversion-tolerance-factor <double>
	    Factor for numerical tolerance of B-spline inversion [multiples of minimum grid pixel size; default=0.1] [Default: 0.1]

       --downsample <string>
	    Downsample grid by factors 'x,y,z' or by single factor 'xyz' [Default: NONE]

       --output-absolute
	    Make output deformation field with absolute target location vectors, rather than relative offset vectors.

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						   xform2dfield(1)

Check Out this Related Man Page

unsplit(1)					       The Computational Morphometry Toolkit						unsplit(1)

NAME

       unsplit - Unsplit images

SYNOPSIS

       unsplit [options] inImage0 inImage1 ...

DESCRIPTION

       Join separate image stacks into a single interleaved image volume

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --output <string>, -o <string>
	    Path for output image.  [Default: NONE]

       --axial, -z
	    Interleaved axial images (along z axis) [default] [This is the default]

       --coronal, -y
	    Interleaved coronal images (along y axis)

       --sagittal, -x
	    Interleaved sagittal images (along x axis)

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							unsplit(1)
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