cmtk-split(1) [debian man page]

split(1)					       The Computational Morphometry Toolkit						  split(1)

NAME

       split - Split images

SYNOPSIS

       split InputImage OutputImagePattern

DESCRIPTION

       Split volume image into sub-images, i.e., to separate interleaved images into passes

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --axial, -a
	    Interleaved axial images [This is the default]

       --sagittal, -s
	    Interleaved sagittal images

       --coronal, -c
	    Interleaved coronal images

       --interleave-x, -x
	    Interleaved along x axis

       --interleave-y, -y
	    Interleaved along y axis

       --interleave-z, -z
	    Interleaved along z axis [This is the default]

       --factor <integer>, -f <integer>
	    Interleave factor. This is the number of subimages generated.  [Default: 2]

       --padded, -p
	    Padded output, i.e., fill in removed slices

       --output-xform-path <string>
	    Optional  path  template  (fprintf-style)  for  output  affine  transformation that maps input image coordinates to each output image.
	    [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							  split(1)

warp2ps(1)					       The Computational Morphometry Toolkit						warp2ps(1)

NAME

       warp2ps - Deformation to PostScript

SYNOPSIS

       warp2ps [options] referenceImage xform

DESCRIPTION

       Write deformation field as deformed grid in PostScript format for visualization and illustration

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --invert-xform
	    Invert the main transformation

       --minus-xform <string>, -m <string>
	    Subtract this transformation (e.g., to exclude initial affine component) [Default: NONE]

       --invert-minus-xform
	    Invert the minus transformation

       --axis-z, -Z
	    Slice orthogonal to z-axis (axial, default) [This is the default]

       --axis-y, -Y
	    Slice orthogonal to y-axis (sagittal)

       --axis-x, -X
	    Slice orthogonal to x-axis (coronal)

       --slice <integer>
	    Index of z-slice (default: center ) [Default: -1]

       --line-width <float>
	    Line width [default: 0] [Default: 0]

       --sampling <integer>
	    Sampling factor (default: 1) [Default: 1]

       --scale <float>
	    Coordinage scale factor (default: 1.0) [Default: 1]

       --box, -b
	    Draw reference bounding box

       --crop <string>, -C <string>
	    Set in-plane crop region as 'x0,y0:x1,y1'

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							warp2ps(1)