reorient(1) The Computational Morphometry Toolkit reorient(1)
NAME
reorient - Reorientation
SYNOPSIS
reorient [options] new-orientation infile outfile
DESCRIPTION
Convert between image orientations, i.e., physically re-order pixel array and adapt stored anatomical orientation information
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
--input-orientation <string>, -i <string>
Override input orientation. This is a three-letter code, e.g., 'RAS', 'LPI', etc. [Default: NONE]
--output-orientation <string>, -o <string>
Override output orientation. Default is 'RAS', or the closest match supported by the output image file format [Default: NONE]
--output-space <string>
Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does not affect the array order. Default is to write image in the
input image space. [Default: NONE]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
CMTK 2.2.2 Jul 20 2012 reorient(1)