cmtk-convert_warp(1) [debian man page]
convert_warp(1) The Computational Morphometry Toolkit convert_warp(1) NAME
convert_warp - Convert nonrigd transformations. SYNOPSIS
convert_warp InputPath OutputPath DESCRIPTION
This tool converts nonrigid BB-spline free-format deformation coordinate transformations between different representations (e.g., absolute vs. relative vectors). Also creates fractional transformations. OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --fractional <float>, -f <float> Write fractional deformation. Range: 0=affine to 1=full nonrigid; Default: 1 [Default: -1] --deformation-only, -d Write only deformation part of transformation (minus global affine component) AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 convert_warp(1)
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xform2dfield(1) The Computational Morphometry Toolkit xform2dfield(1) NAME
xform2dfield - Transformation to Deformation Field SYNOPSIS
xform2dfield OutputPath ReferenceImage XformList DESCRIPTION
Convert parametric rigid or nonrigid transformation to deformation field, sampled at pixel locations of a given reference image OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --mask, -m Use reference image pixels as a binary mask. --inversion-tolerance-factor <double> Factor for numerical tolerance of B-spline inversion [multiples of minimum grid pixel size; default=0.1] [Default: 0.1] --downsample <string> Downsample grid by factors 'x,y,z' or by single factor 'xyz' [Default: NONE] --output-absolute Make output deformation field with absolute target location vectors, rather than relative offset vectors. AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 xform2dfield(1)