cmtk-concat_affine(1) [debian man page]

concat_affine(1)				       The Computational Morphometry Toolkit					  concat_affine(1)

NAME

       concat_affine - Concatenate affine transformations

SYNOPSIS

       concat_affine [options] x0 [x1 ...]
	WHERE x0 ... xN is [{-i,--inverse}] affine transformation #

DESCRIPTION

       This tool computes the explicit concatenation of multiple affine coordinate transformations, each of which can be optionally inverted.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --outfile <string>, -o <string>
	    Output transformation.  [Default: concat.xform ]

       --append, -a
	    Append to output file [default: overwrite].

       --invert-output, -I
	    Invert concatenated transformation before output [default: no].

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						  concat_affine(1)

fit_affine_xform(1)				       The Computational Morphometry Toolkit				       fit_affine_xform(1)

NAME

       fit_affine_xform - Fit Single Affine Transformation to Concatenated List

SYNOPSIS

       fit_affine_xform InputImage XformList

DESCRIPTION

       Fit a linear affine transformation to a list of concatenated, optionally inverted, transformations.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --inversion-tolerance <double>
	    Numerical  tolerance  of B-spline inversion in mm. Smaller values will lead to more accurate inversion, but may increase failure rate.
	    [Default: 1e-08]

   Fitting Options
       --rigid
	    Fit rigid transformation (rotation and translation only) using SVD.

       --affine
	    Fit full affine transformation (rotation, translation, scales, shears) using pseudoinverse.  [This is the default]

   Output Options
       --output <transformation-path>, -o <transformation-path>
	    Path for the output transformation.  [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 					       fit_affine_xform(1)