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clmvol(1) [debian man page]

clm vol(1)							  USER COMMANDS 							clm vol(1)

  NAME
      clm vol - compute volatile nodes from a set of clusterings

      clmvol  is  not  in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode vol.
      The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.

  SYNOPSIS
      clm vol [-fraction num (nff factor)] [-o fname (output file)] <cl file>+

  DESCRIPTION
      clm vol computes a score for each node, which at a minimum is equal to one.  The output is in the form of a matrix containing a single  col-
      umn.  The  score	correlates with what is deemed to be volatile behaviour. For all pairs of clusterings the set of all intersections is com-
      puted, and these are considered in turn.	An intersection is deemed to be volatile if the size of the intersection is  less  than  half  the
      size  of	the  smallest of the two clusters. In that case, for each node in the intersection its volatility score is incremented by one over
      the size of the intersection.  The size comparison can be made more stringent by increasing the -fraction <frac> option, which is by default
      set  to 0.5.  Volatility occurs if the size of the intersection is less than <frac> times the size of the smallest cluster. If the -fraction
      value is increased all the way up to 1.0, the implication is that an intersection is considered volatile unless one  of  the  two  clusteres
      considered is a subset of the other.

  AUTHOR
      Stijn van Dongen.

  OPTIONS
      -fraction num (nff factor)
	See the discussion at DESCRIPTION.

      -o fname (output file)

  SEE ALSO
      mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.

  clm vol 12-068						      8 Mar 2012							  clm vol(1)

Check Out this Related Man Page

clm meet(1)							  USER COMMANDS 						       clm meet(1)

  NAME
      clm meet - compute the intersection of a set of clusterings.

      clmmeet  is not in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode meet.
      The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.

  SYNOPSIS
      clm meet [-o fname (output file name)] [-h (print synopsis, exit)] [--apropos (print synopsis,  exit)]  [--version  (print  version,  exit)]
      <file name>+

  DESCRIPTION
      clm  meet  computes the intersection of a set of clusterings, that is, the largest clustering that is a subclustering of all the clusterings
      in the set. It stores the intersection (or meet) in the argument to the -o flag, which must be the first option given.  All remaining  argu-
      ments  are  interpreted  as  names of files containing clusterings in mcl format (see mcxio(5)), which must all pertain to a set of the same
      cardinality.

      This utility can be useful in measuring (in conjunction with clm dist) the consistency of a set of clusterings at different levels of granu-
      larity  -  if  the meet of all those clusterings is close to being a subclustering of each of them, consistency is good. See clm dist for an
      example.

  OPTIONS
      -o fname (output file name)

  AUTHOR
      Stijn van Dongen.

  SEE ALSO
      mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.

  clm meet 12-068						      8 Mar 2012							 clm meet(1)
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