BPPALNSCORE(1) General Commands Manual BPPALNSCORE(1)NAME
bppalnscore - Bio++ alignment scoring
SYNOPSIS
bppalnscore [options]
AVAILABILITY
All UNIX flavors
DESCRIPTION
bppalnscore compares two alignment and compute corresponding column scores. Scores can be output to a text file, and/or used to generate a
site selection to be output as a Mase file.
OPTIONS
You should refer to 'info bppsuite' or to the online manual of bppsuite for a complete list of available options.
--noninteractive
generates output for redirection in a file.
param=file
reads a file for loading options
AUTHOR
Bio++ Development Team.
LOCAL BPPALNSCORE(1)
Check Out this Related Man Page
Bio::Graphics::Glyph::text_in_box(3pm) User Contributed Perl Documentation Bio::Graphics::Glyph::text_in_box(3pm)NAME
Bio::Graphics::Glyph::text_in_box - The "text in box" glyph
SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This glyph draws the specified text in a rectangular box.
OPTIONS
In addition to the common options, the following glyph-specific options are recognized:
Option Description Default
------------------------
-text The text to draw in the box 3'
-text_pad The number of pixels to offset 3
the box
-text_bgcolor none
The background color of the box
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Vsevolod (Simon) Ilyushchenko <simonf@cshl.edu>.
Copyright (c) 2004 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::text_in_box(3pm)
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