asnval(1) [debian man page]
ASNVAL(1) NCBI Tools User's Manual ASNVAL(1) NAME
asnval - validate ASN.1 biological sequence records SYNOPSIS
asnval [-] [-A] [-B] [-C N] [-D] [-E str] [-F] [-G] [-J] [-K] [-L filename] [-M] [-N flags] [-P N] [-Q N] [-R N] [-S N] [-T] [-U] [-X] [-Y] [-Z] [-a type] [-b] [-c] [-d path] [-e] [-f str] [-i filename] [-k] [-l] [-o filename] [-p path] [-q] [-r] [-u] [-v N] [-x str] DESCRIPTION
asnval is a command-line tool to validate ASN.1-format biological sequence records. OPTIONS
A summary of options is included below. - Print usage message -A Validate Alignments -B Validate Barcodes -C N Max count -D Disable message suppression -E str Only Error Code to Show -F Test network access -G GI lookup from accession -J Require ISO-JTA? -K Summary to error file -L filename Log File -M Match locus_tag against General ID -N flags Latitude-longitude / country flags 0 none 1 test state/province 2 ignore water exception 3 both of the above -P N Highest severity for error to show: 0 none 1 informational 2 warning 3 error (default for -Q) 4 grounds for rejection (default for -P, -R) -Q N Lowest severity for error to show, per P -R N Severity for error in return code, per P -S N Skip count -T Use Threads -U Genome center submission -X Exon splice check -Y Check against old IDs -Z Remote CDS product fetch -a type Input ASN.1 type: a Automatic (default) c Catenated z Any e seq-Entry b Bioseq s bioseq-Set m seq-subMit t baTch bioseq-set u batch seq-sUbmit -b Batch file is Binary -c Batch file is Compressed -d path Path to Indexed Binary ASN.1 Data -e Ignore transcription/translation Exceptions -x str Substring filter -i filename Single input file (standard input by default) -k Local fetching -l Lock components in advance -o filename Single output file -p path Path to ASN.1 Files -q Taxonomy lookup -r Remote Fetching from ID -u Recurse -v N Verbosity: 1 Standard report (default) 2 Accession / severity / code (space delimited) 3 Accession / severity / code (tab delimited) 4 XML report 5 Accession / GI / severity / code (tab delimited) -x str File selection substring (.ent by default) AUTHOR
The National Center for Biotechnology Information. SEE ALSO
asndisc(1), cleanasn(1), sequin(1). NCBI
2012-06-24 ASNVAL(1)
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ASNTOOL(1) NCBI Tools User's Manual ASNTOOL(1) NAME
asntool - process ASN.1 module specifications SYNOPSIS
asntool [-] [-B filename] [-D N] [-G] [-I str] [-J type] [-K str] [-L str] [-M filename,...] [-P str] [-Q] [-S filename] [-T filename] [-V] [-X filename] [-Z] [-b N] [-d filename] [-e filename] [-f filename] [-l filename] -m filename [-o filename] [-p filename] [-t str] [-v filename] [-w N] [-x filename] DESCRIPTION
asntool reads, validates, and displays ASN.1 module specifications. OPTIONS
A summary of options is included below. - Print usage message -B filename Generate objects and code in files named filename.* -D N Debugging level for code generation: 0 No debugging (default) 1 Shallow debugging 2 Deep debugging 3-9 Same as 2 -G Generate object loader .c and .h files -I str Put "#include str" in generated .c file -J type Register type type with object manager -K str In generated .c, force name of #included asn header to str -L str Label registered type as str -M filename,... Search the ASN.1 modules in filename,... for external references -P str XML module prefix for DOCTYPE -Q Use quoted syntax form for generated include files -S filename Send debugging output to filename rather than stderr -T filename Dump ASN.1 tree to filename -V Force CHOICE objects to use custom structures rather than ValNodePtrs, for compatibility with some old hand-coded object loaders. -X filename Write XML DTD to filename. If filename is "m", print each module to a separate file. -Z Bit twiddle for optional zero value base slots -b N Use N-byte buffers (default = 1024; anything between 512 and 10000 is legal) -d filename Read binary values from filename (requires -t) -e filename Write binary values to filename -f filename Write ASN.1 module to filename -l filename Write ASN.1 loader to filename -m filename Read ASN.1 module from filename -o filename Write header to filename -p filename Write print values to filename -t str Expect binary values to have type str -v filename Read print values from filename -w N Limit values in #defines to N bits (default = 31; anything between 31 and 128 is legal) -x filename Write XML data to filename AUTHOR
The National Center for Biotechnology Information. NCBI
2010-09-01 ASNTOOL(1)