asn2fsa(1) [debian man page]
ASN2FSA(1) NCBI Tools User's Manual ASN2FSA(1) NAME
asn2fsa - convert biological sequence data from ASN.1 to FASTA SYNOPSIS
asn2fsa [-] [-A acc] [-D] [-E] [-H] [-L filename] [-T] [-a type] [-b] [-c] [-d path] [-e N] [-f path] [-g] [-h filename] [-i filename] [-k] [-l] [-m] [-o filename] [-p path] [-q filename] [-r] [-s] [-u] [-v filename] [-x str] [-z] DESCRIPTION
asn2fsa converts biological sequence data from ASN.1 to FASTA. OPTIONS
A summary of options is included below. - Print usage message -A acc Accession to fetch -D Use Dash for Gap -E Extended Seq-ids -H HTML spans -L filename Log file -T Use Threads -a type Input ASN.1 type: a Automatic (default) z Any e Seq-entry b Bioseq s Bioseq-set m Seq-submit t batch processing (suitable for official releases; autodetects specific type) -b Bioseq-set is Binary -c Bioseq-set is Compressed -d path Path to ReadDB Database -e N Line length (70 by default; may range from 10 to 120) -f path Path to indexed FASTA data -g Expand delta gaps into Ns -h filename Far component cache output file name -i filename Single input file (standard input by default) -k Local fetching -l Lock components in advance -m Master style for near segmented sequences -o filename Nucleotide Output file name -p path Path to ASN.1 Files -q filename Quality score output file name -r Remote fetching from NCBI -s Far genomic contig for quality scores -u Recurse -v filename Protein output file name -x str File selection substring (.ent by default) [String] -z Print quality score gap as -1 AUTHOR
The National Center for Biotechnology Information. SEE ALSO
asn2all(1), asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1). NCBI
2011-09-02 ASN2FSA(1)
Check Out this Related Man Page
ASNTOOL(1) NCBI Tools User's Manual ASNTOOL(1) NAME
asntool - process ASN.1 module specifications SYNOPSIS
asntool [-] [-B filename] [-D N] [-G] [-I str] [-J type] [-K str] [-L str] [-M filename,...] [-P str] [-Q] [-S filename] [-T filename] [-V] [-X filename] [-Z] [-b N] [-d filename] [-e filename] [-f filename] [-l filename] -m filename [-o filename] [-p filename] [-t str] [-v filename] [-w N] [-x filename] DESCRIPTION
asntool reads, validates, and displays ASN.1 module specifications. OPTIONS
A summary of options is included below. - Print usage message -B filename Generate objects and code in files named filename.* -D N Debugging level for code generation: 0 No debugging (default) 1 Shallow debugging 2 Deep debugging 3-9 Same as 2 -G Generate object loader .c and .h files -I str Put "#include str" in generated .c file -J type Register type type with object manager -K str In generated .c, force name of #included asn header to str -L str Label registered type as str -M filename,... Search the ASN.1 modules in filename,... for external references -P str XML module prefix for DOCTYPE -Q Use quoted syntax form for generated include files -S filename Send debugging output to filename rather than stderr -T filename Dump ASN.1 tree to filename -V Force CHOICE objects to use custom structures rather than ValNodePtrs, for compatibility with some old hand-coded object loaders. -X filename Write XML DTD to filename. If filename is "m", print each module to a separate file. -Z Bit twiddle for optional zero value base slots -b N Use N-byte buffers (default = 1024; anything between 512 and 10000 is legal) -d filename Read binary values from filename (requires -t) -e filename Write binary values to filename -f filename Write ASN.1 module to filename -l filename Write ASN.1 loader to filename -m filename Read ASN.1 module from filename -o filename Write header to filename -p filename Write print values to filename -t str Expect binary values to have type str -v filename Read print values from filename -w N Limit values in #defines to N bits (default = 31; anything between 31 and 128 is legal) -x filename Write XML data to filename AUTHOR
The National Center for Biotechnology Information. NCBI
2010-09-01 ASNTOOL(1)