06-30-2005
10 More Discussions You Might Find Interesting
1. UNIX for Advanced & Expert Users
I am running a make file through the gnu make tool and i am getting the following error
jsh1035c:/users/egate453/admegate/kapil/samples $ make -f GNUmakefile queue_c
make -f ./GNUmakefile queue_c in_objdir=1 build_root=/users/egate453/admegate/kapil/samples
make: Entering directory... (2 Replies)
Discussion started by: handak9
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2. UNIX for Dummies Questions & Answers
My system is ubuntu, can I use PMake ? (0 Replies)
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3. Programming
Is this possible? Right now I'm developing some code for Linux, Windows and OS X. To build on each of the systems I've currently got separate build targets for each platform. Ideally I'd like to set up a single make rule that can detect the appropriate target and build it.
I know this is... (2 Replies)
Discussion started by: G_Morgan
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4. SCO
Installed GNU make and the GNU C/C++ compiler on SCO Openserver 5.0.7 recently.
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Under root, make do run, but root can't access the compiler at all, even tho I set root's path to point to the compiler.... (0 Replies)
Discussion started by: The_Librarian
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5. Programming
Hello everybody,
Currently I'm learning how to build projects (C programming) with GNU make. I have a problem with one Makefile and I would appreciate if you could kindly give me a hand. Here is the environment:
OS: Redhat linux 5
compiler: gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)... (2 Replies)
Discussion started by: dariyoosh
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6. AIX
Hi all
i had installed gcc version 3.3.2 on my AIX 5.3 machine.
which make utility i have to instal so it will fit the gcc version
tnx
skfn (2 Replies)
Discussion started by: skfn1203
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7. AIX
Hi team,
I am new to unix,and need your advice on the below.
I am using aix5.3 and have installed make-3.82 on the server.
I need to use gmake for configuring and installing a package ,but it is giving error at the below
root@sapsrp:/usr/tmp/xymon-4.3.2
# ./configure.server
... (7 Replies)
Discussion started by: sonal kumar
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8. Shell Programming and Scripting
It's been a while since I had to write a Makefile, but I've managed to clobber this together:
SRC=module1.c module2.c
OBJS=$(SRC:%.c=%.o)
HDR=include1.h include2.h
CC=gcc
CFLAGS=-Wall -ggdb -D_XOPEN_SOURCE -I. -ansi
all: program
program: $(OBJS)
$(CC) $(CFLAGS) -o $@ $(OBJS)
... (3 Replies)
Discussion started by: pludi
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9. Shell Programming and Scripting
Hi,
I do "touch poub.mlc"
Download my Makefile,
But when I try : make -f Makefile.txt(.txt in order my file to be accepted for upload), it says:"no rule for poub.mlo target"
What is wrong in my Makefile(test yourself please before posting)? (1 Reply)
Discussion started by: synhedionn
1 Replies
10. OS X (Apple)
As you may already know, Apple has integrated all the GNU developer tools into their own graphical development environment so you can no longer use them from the command line. This means that open source software that is distributed as source is inaccessible to users of newer versions of Mac OS X,... (4 Replies)
Discussion started by: Ultrix
4 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)
NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS
-p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)
SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)
AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)