Sponsored Content
Top Forums Shell Programming and Scripting Print matching fields (if they exist) from two text files Post 302988535 by bakunin on Tuesday 27th of December 2016 03:37:20 PM
Old 12-27-2016
Quote:
Originally Posted by gacanepa
I tried with the following join command:
Code:
join -t, -1 1 -2 1 -o 1.1 2.2 -a 1 -a 2 test1 test2

but it only complies with requirement 2 above and leaves non-matching fields empty:
Yes: works as designed. ;-)

The join-command follows your orders to include non-matched lines (the "-a") and therefore you see these lines in the output. Depending on what exactly you want leave out "-a 1" or "-a 2" or both. Add a "1.2" to your output rules as fallback.

I hope this helps.

bakunin
These 2 Users Gave Thanks to bakunin For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

AWK Matching Fields and Combining Files

Hello! I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
Discussion started by: Michelangelo
5 Replies

2. Shell Programming and Scripting

comparing two files for matching fields

I am newbie to unix and would please like some help to solve the task below I have two files, file_a.text and file_b.text that I want to evaluate. file_a.text 1698.74 1711.88 6576.25 899.41 3205.63 4187.98 697.35 1551.83 ... (3 Replies)
Discussion started by: gameli
3 Replies

3. Shell Programming and Scripting

Matching multiple fields from two files and then some?

Hi, I am working with two tab-delimited files with multiple columns, formatted as follows: File 1: >chrom 1 100 A G 20 …(10 columns) >chrom 1 104 G C 18 …(10 columns) >chrom 2 28 T C ... (4 Replies)
Discussion started by: mbp
4 Replies

4. UNIX for Advanced & Expert Users

awk print all fields except matching regex

grep -v will exclude matching lines, but I want something that will print all lines but exclude a matching field. The pattern that I want excluded is '/mnt/svn' If there is a better solution than awk I am happy to hear about it, but I would like to see this done in awk as well. I know I can... (11 Replies)
Discussion started by: glev2005
11 Replies

5. Shell Programming and Scripting

How to merge two or more fields from two different files where there is non matching column?

Hi, Please excuse for often requesting queries and making R&D, I am trying to work out a possibility where i have two files field separated by pipe and another file containing only one field where there is no matching columns, Could you please advise how to merge two files. $more... (3 Replies)
Discussion started by: karthikram
3 Replies

6. Shell Programming and Scripting

awk to combine all matching fields in input but only print line with largest value in specific field

In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited, that are in $1 of gene which is just a single column of text. However only the line with the greatest $9 value in input needs to be printed. So in the example below all the MECP2 and LTBP1... (0 Replies)
Discussion started by: cmccabe
0 Replies

7. UNIX for Beginners Questions & Answers

Awk: matching multiple fields between 2 files

Hi, I have 2 tab-delimited input files as follows. file1.tab: green A apple red B apple file2.tab: apple - A;Z Objective: Return $1 of file1 if, . $1 of file2 matches $3 of file1 and, . any single element (separated by ";") in $3 of file2 is present in $2 of file1 In order to... (3 Replies)
Discussion started by: beca123456
3 Replies

8. Shell Programming and Scripting

awk to print fields that match using conditions and a default value for non-matching in two files

Trying to use awk to match the contents of each line in file1 with $5 in file2. Both files are tab-delimited and there may be a space or special character in the name being matched in file2, for example in file1 the name is BRCA1 but in file2 the name is BRCA 1 or in file1 name is BCR but in file2... (6 Replies)
Discussion started by: cmccabe
6 Replies

9. UNIX for Beginners Questions & Answers

Matching fields between two files, repeated records

In two previous posts (here) and (here), I received help from forum members comparing multiple fields across two files and selectively printing portions of each as output based upon would-be matches using awk. I had been fairly comfortable populating awk arrays with fields and using awk's special... (3 Replies)
Discussion started by: jvoot
3 Replies

10. Shell Programming and Scripting

Comparing two files by two matching fields

Long time listener first time poster. Hope someone can advise. I have two files, 1000+ lines in each, two fields in each file. After performing a sort, what is the best way to find exact matches where field $1 and $2 in file1 are also present in file2 on the same line, then output only those... (6 Replies)
Discussion started by: bstaff
6 Replies
JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [-an] [-e s] [-o list] [-tc] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1). BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
All times are GMT -4. The time now is 01:46 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy